Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1146
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    24   1.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.5  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   6.0  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   6.0  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +3

Query: 120 EFIDMLEIIYICSF 161
           E++  +E++YICS+
Sbjct: 170 EYVQAIEVLYICSY 183


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = -1

Query: 230 EEPNDIYYQHTNVTN--YP 180
           + PN IY   TN+TN  YP
Sbjct: 344 QSPNQIYQPVTNLTNLTYP 362


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 539 CFYTILLYVFFSTKSQQS 592
           CFY +L+ V   +++QQS
Sbjct: 327 CFYWLLVMVAMFSRTQQS 344


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 539 CFYTILLYVFFSTKSQQS 592
           CFY +L+ V   +++QQS
Sbjct: 283 CFYWLLVMVAMFSRTQQS 300


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,809
Number of Sequences: 336
Number of extensions: 2553
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)