Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1146
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240...    28   9.0  

>09_06_0244 +
           21822811-21823246,21823337-21823468,21823949-21824037,
           21824135-21824224,21825033-21825603,21826097-21826734,
           21826978-21827098,21827223-21827337,21828234-21829723,
           21829830-21829901,21830151-21830196,21830413-21830515,
           21830591-21830674,21831035-21831475,21831651-21831746,
           21831896-21832045,21832131-21832274,21832414-21832527,
           21832621-21832803,21832901-21832945,21833058-21833192
          Length = 1764

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 649 RITK*IKVLEAKFKTGFRSALLRLC-GKEHIQ*NSVKAQNSKNSYSAMFLDRDE 491
           +  K I+ +E  F TG R   L +  G  H + N +    +KNS+ ++FL   E
Sbjct: 453 KANKTIENIEPSFGTGNRKRSLDVSNGTSHSELNEITDDAAKNSFISLFLSHLE 506


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,811,661
Number of Sequences: 37544
Number of extensions: 195116
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)