Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1144
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    91   1e-19
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    91   2e-19
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    28   1.1  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   3.3  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    27   3.3  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   7.6  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   10.0 

>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 41/87 (47%), Positives = 59/87 (67%)
 Frame = +1

Query: 250 QNGKHGHAKFTWLGLISSMVKSMXYICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADN 429
           + GKHGHAK   + L     +    + PSTHNMDVP VKR++YQL +I DDGYL LM  +
Sbjct: 49  KTGKHGHAKVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTD 107

Query: 430 GDLREDLKIPDGDLGTQLRTDFDSGKD 510
           G  ++D+++P+G+LG ++   FD G+D
Sbjct: 108 GTTKDDVRLPEGELGNEIEEGFDEGRD 134



 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 36/50 (72%), Positives = 42/50 (84%)
 Frame = +2

Query: 107 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKT 256
           M + E   FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKT
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKT 50


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 41/87 (47%), Positives = 59/87 (67%)
 Frame = +1

Query: 250 QNGKHGHAKFTWLGLISSMVKSMXYICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADN 429
           + GKHGHAK   + L     +    + PSTHNMDVP VKR++YQL +I DDGYL LM  +
Sbjct: 49  KTGKHGHAKVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTD 107

Query: 430 GDLREDLKIPDGDLGTQLRTDFDSGKD 510
           G  ++D+++P+G+LG ++   F+ GKD
Sbjct: 108 GTTKDDVRLPEGELGNEIEEGFEEGKD 134



 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 36/50 (72%), Positives = 42/50 (84%)
 Frame = +2

Query: 107 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKT 256
           M + E   FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKT
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKT 50


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 554 DDALLTAGFQHGAQQSLPLSKSVRNCVPRSPSGI--LRSSRRSP 429
           DD       Q G   S PLS+SV   VP SP  I   + S +SP
Sbjct: 290 DDGHSATTIQQGDVSSYPLSRSVSTPVPMSPISISPAKPSPQSP 333


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 343  NMDVPHVKREDYQLTDISDDGYL 411
            NM +P+++ E  Q+ D + D YL
Sbjct: 968  NMSIPYIRGEYVQMIDANQDNYL 990


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 541 RSASSPSKQTQLSTNKPTQH 600
           +S SSPS+ + LST+KP  H
Sbjct: 286 KSESSPSRSSVLSTSKPEVH 305


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 361 VKREDYQLTDISDDGYL 411
           +KREDY+LT  ++ GYL
Sbjct: 91  IKREDYELTLCANCGYL 107


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 529 NPAVRSASSPSKQTQLSTNKPT 594
           N +++ +S PS++  LS+N+PT
Sbjct: 87  NQSIQGSSLPSEKPYLSSNQPT 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,756
Number of Sequences: 5004
Number of extensions: 53645
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)