Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1144
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 92 3e-19
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 89 2e-18
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 89 3e-18
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 89 3e-18
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 49 4e-06
07_03_0977 + 23092563-23092643,23092736-23092773,23092861-230930... 33 0.16
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.16
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 1.1
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 30 1.9
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 29 2.6
03_05_0200 - 21911260-21911322,21911655-21911705,21911756-219118... 29 3.4
07_01_0091 - 692416-693906 29 4.5
03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068 29 4.5
09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591 28 5.9
02_05_0277 - 27390783-27391153,27391229-27391507,27391580-273919... 28 5.9
07_01_0200 + 1433859-1434377 28 7.8
07_01_0196 + 1400708-1401226 28 7.8
07_01_0192 + 1367558-1368076 28 7.8
07_01_0188 + 1334405-1334923 28 7.8
04_01_0031 + 381389-381841 28 7.8
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 92.3 bits (219), Expect = 3e-19
Identities = 40/88 (45%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Frame = +1
Query: 250 QNGKHGHAKFTWLGLISSMVKSMXYICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADN 429
+ GKHGHAK ++ + K + I PS+HN DVPHV R +YQL DIS+DG+++L+ +N
Sbjct: 82 KTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTEN 141
Query: 430 GDLREDLKIP-DGDLGTQLRTDFDSGKD 510
G+ ++DL++P D +L +Q++ F GKD
Sbjct: 142 GNTKDDLRLPTDDNLLSQIKDGFGEGKD 169
Score = 55.2 bits (127), Expect(2) = 3e-08
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +2
Query: 107 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK 229
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
Score = 20.6 bits (41), Expect(2) = 3e-08
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +2
Query: 227 KIVEMSTSKT 256
K+VE+STSKT
Sbjct: 74 KVVEVSTSKT 83
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 89.4 bits (212), Expect = 2e-18
Identities = 40/88 (45%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
Frame = +1
Query: 250 QNGKHGHAKFTWLGLISSMVKSMXYICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADN 429
+ GKHGHAK ++ + K + I PS+HN DVPHV R +YQL DIS+DG+++L+ ++
Sbjct: 67 KTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTES 126
Query: 430 GDLREDLKIP-DGDLGTQLRTDFDSGKD 510
G+ ++DL++P D L Q++T F GKD
Sbjct: 127 GNTKDDLRLPTDDSLLGQIKTGFGEGKD 154
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/55 (52%), Positives = 40/55 (72%), Gaps = 5/55 (9%)
Frame = +2
Query: 107 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPC----KIVEMSTSKT 256
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPC K+VE+STSKT
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKT 68
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/89 (46%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
Frame = +1
Query: 250 QNGKHGHAKFTWLGLISSMVKSMXYICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADN 429
+ GKHGHAK ++G+ K + I PS+HN DVPHV R DYQL DIS+DG+++L+ ++
Sbjct: 50 KTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTES 109
Query: 430 GDLREDLKIP-DGDLGTQLRTDF-DSGKD 510
G+ ++DL++P D L Q++ F + GKD
Sbjct: 110 GNTKDDLRLPTDDTLTNQIKNGFGEEGKD 138
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/51 (56%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Frame = +2
Query: 107 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKT 256
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKT
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKT 51
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/88 (46%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Frame = +1
Query: 250 QNGKHGHAKFTWLGLISSMVKSMXYICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADN 429
+ GKHGHAK ++ + K + I PS+HN DVPHV R DYQL DIS+DG+++L+ ++
Sbjct: 1385 KTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTES 1444
Query: 430 GDLREDLKIP-DGDLGTQLRTDFDSGKD 510
G ++DL++P D L TQ++ F GKD
Sbjct: 1445 GGTKDDLRLPSDEALLTQIKDGFAEGKD 1472
Score = 54.0 bits (124), Expect = 1e-07
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 14/64 (21%)
Frame = +2
Query: 107 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPC-------------KIVEMS 244
M D E+ HFE+ D+GAS T+P Q +RKNG +++K RPC K+VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382
Query: 245 TSKT 256
TSKT
Sbjct: 1383 TSKT 1386
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/53 (43%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Frame = +1
Query: 358 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKD 510
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++T F GKD
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKD 98
>07_03_0977 +
23092563-23092643,23092736-23092773,23092861-23093088,
23093307-23093527,23093640-23093797,23093907-23094339,
23094442-23095394
Length = 703
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 232 C*NVHIQNGKHGHAKFTWLGLISSMVKSMXYICPSTHNMDVPHVKREDY-QLTDISDDGY 408
C N+ + NG G K LGL + + KS C T P V E+Y +L DI G
Sbjct: 157 CDNIFV-NGNQGEVKIGDLGLAAILRKSHAVHCVGTPEFMAPEVYEEEYNELVDIYSFGM 215
Query: 409 LTL 417
L
Sbjct: 216 CVL 218
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +3
Query: 147 PGPQPPSPCNVRPCVKMVSLC*RVVHARLLKCPHPKRKARP 269
P PQPP PC PC K C + C PK K +P
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC-KPKPCHCCSCEKPKPKPKP 120
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 349 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 468
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 108 WVTSKTHTLRPETPGPQPPSPCNV 179
W+T T P+ P P PP PC+V
Sbjct: 52 WLTWPPPTPLPDAPPPPPPHPCDV 75
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 92 IQNTTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMS 244
+Q ++ D E H T +ATFPM L N + +GR CK V +S
Sbjct: 431 VQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVS 481
>03_05_0200 -
21911260-21911322,21911655-21911705,21911756-21911851,
21911947-21912045,21913213-21913526,21913621-21913696,
21913788-21915136,21915344-21915944
Length = 882
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +1
Query: 238 NVHIQNGKHGHAKFTWLGLISSMVKSMXYIC-PSTHNMDVPHVKREDYQLTDISDDGYLT 414
N+H+ G+H + LG + + V + I PS + V ED+Q + D
Sbjct: 22 NIHVIYGEHSETNYPTLGPVKTEVIDLEEIASPSNPEFNDDSVGDEDFQNVSLKDLRAQC 81
Query: 415 LMADNGDLREDLKIPD 462
+ L+ D + PD
Sbjct: 82 KAKNRRALKVDSERPD 97
>07_01_0091 - 692416-693906
Length = 496
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Frame = +3
Query: 135 RPETPGPQPPSPCNVRPCVKMVSLC*RVVHARLLKCPHPKRKARPR*IHLVGIDIFNGKK 314
RP G PP P ++ CV L + HA + + A PR I VG N ++
Sbjct: 75 RPLHRGSPPPPPATLQLCVGHRCLVFHLAHADAIPAALRRFLADPR-ITFVGSGASNDRR 133
Query: 315 -YXXYLSLHTQHGRTSR 362
Y LH R R
Sbjct: 134 MLSAYYDLHVASARELR 150
>03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068
Length = 145
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 138 PETPGPQPPSPCNVRP-CVKMVSLC*RVVHARLLKCPHP 251
PE P PP C + P C + C ++ +LL+ HP
Sbjct: 8 PENESPPPPPHCWIYPECTLVTRSCCLLLRLKLLRHGHP 46
>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
Length = 455
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 257 ESTATLNSLGWD*YLQW*KV*XISVPPHTTW 349
E T T+NSLG L K+ PPH TW
Sbjct: 290 ERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW 320
>02_05_0277 -
27390783-27391153,27391229-27391507,27391580-27391970,
27392042-27392199,27392755-27392975,27393059-27393286,
27394231-27394268,27394616-27394693
Length = 587
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 232 C*NVHIQNGKHGHAKFTWLGLISSMVKSMXYICPSTHNMDVPHVKREDY-QLTDISDDGY 408
C N+ + NG HG K LGL + M+ T P + E+Y +L DI G
Sbjct: 156 CDNIFV-NGNHGEVKIGDLGLATVMLTPRAKSVIGTPEFMAPELYDENYDELVDIYSFGM 214
Query: 409 LTL 417
L
Sbjct: 215 CML 217
>07_01_0200 + 1433859-1434377
Length = 172
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -3
Query: 592 LVYLSRAVFALTAMT---HSSPQDFSTVHNNPCR 500
LV L+ A A+ A T SSPQDF HN+ R
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDARR 41
>07_01_0196 + 1400708-1401226
Length = 172
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -3
Query: 592 LVYLSRAVFALTAMT---HSSPQDFSTVHNNPCR 500
LV L+ A A+ A T SSPQDF HN+ R
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDARR 41
>07_01_0192 + 1367558-1368076
Length = 172
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -3
Query: 592 LVYLSRAVFALTAMT---HSSPQDFSTVHNNPCR 500
LV L+ A A+ A T SSPQDF HN+ R
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDARR 41
>07_01_0188 + 1334405-1334923
Length = 172
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -3
Query: 592 LVYLSRAVFALTAMT---HSSPQDFSTVHNNPCR 500
LV L+ A A+ A T SSPQDF HN+ R
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDARR 41
>04_01_0031 + 381389-381841
Length = 150
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Frame = +3
Query: 96 KTQQWVTSKTHTLR-----PETPGPQPPSPCNVRP 185
+ ++W T +T TLR P+T P PP P P
Sbjct: 69 RERRWCTPRTSTLRREWALPDTASPPPPLPLEPAP 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,431,346
Number of Sequences: 37544
Number of extensions: 384714
Number of successful extensions: 1334
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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