Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1144
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                81   8e-16
SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044)                   30   2.0  
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   2.6  
SB_34814| Best HMM Match : DUF1685 (HMM E-Value=4.3)                   29   2.6  
SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)           29   3.4  
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               29   3.4  
SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         28   6.0  
SB_8748| Best HMM Match : Astacin (HMM E-Value=0)                      28   6.0  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   6.0  
SB_34466| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 39/70 (55%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
 Frame = +2

Query: 101 TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKT--ESTATL 274
           T   ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKT     A +
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644

Query: 275 NSLGWD*YLQ 304
            ++  D YL+
Sbjct: 645 TNIEEDGYLE 654



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 19/44 (43%), Positives = 32/44 (72%)
 Frame = +1

Query: 379 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKD 510
           ++T+I +DGYL LM DNGD R D+K+ D D+  ++R  F++ ++
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASEN 686


>SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044)
          Length = 537

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 393 DISQLVVFALHVRYVHVVCGGTDIXHTFYH 304
           DIS++VV+   +R+ HV+C G D     +H
Sbjct: 134 DISRVVVWFRLLRHFHVLCTGVDFSDRHFH 163


>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -1

Query: 498  VEVSTQLCAEVTIRDFEVLTQVTVVSHQGQVAIIRDISQLVVFALHVRYVHVVCGGTDIX 319
            +  +  +C  +T  + E   Q  V+    + +  + I Q++V+A+ +  + VVC G    
Sbjct: 1662 INANDVMCGSLTETEKEEARQRRVI----EKSATKKIKQMIVYAIFMVLMSVVCYGNRAD 1717

Query: 318  HTFY 307
            H FY
Sbjct: 1718 HGFY 1721


>SB_34814| Best HMM Match : DUF1685 (HMM E-Value=4.3)
          Length = 330

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 542 LTAGFQHGAQQSLPLSKSVRNCVPRSPSG 456
           L AG + G + S+P+   VR+ VPR+P G
Sbjct: 300 LRAGSREGRRSSVPVISPVRDRVPRNPLG 328


>SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)
          Length = 355

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 580 SRAVFALTAMTHSSPQDFSTVHNNPCRCRSQYA 482
           ++ + A +  T  +P   +T +NN C CR + A
Sbjct: 12  NKRIIASSITTEDAPTSLATANNNTCNCRQKNA 44


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 114 TSKTHTLRPETPGPQPPSPCNVRPCVKMVSLC*RVVH-ARLLKCPH 248
           T+K HT +P T  P    P N+ P +   +L   ++H     + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 78  LTVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRPC 188
           L   K KT +  T+K +T +P T  P+   P   +PC
Sbjct: 96  LYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132


>SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 580 SRAVFALTAMTHSSPQDFSTVHNNPCRCRSQYA 482
           S+ + A +  T   P  F+T +N  C CR + A
Sbjct: 143 SKRIIASSITTEDVPTSFATANNKTCNCRQKNA 175


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 203  RNHFYAGPNIAW--GRWLRPRSLRSQSV 126
            R  F+  PN+A   G+WL P+SLR+  V
Sbjct: 947  REGFFNNPNLAGCKGQWLGPKSLRASRV 974


>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 757

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 317 ILFTIEDINPNQ-VNLAWPCFP 255
           +L + +D  PNQ  NLAW CFP
Sbjct: 648 LLHSADDERPNQGENLAWGCFP 669


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 81  TVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRP 185
           +VV     + VT K  T +P TP P  P P   RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792


>SB_34466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 578 ESCVCFDGDDALLTAGFQHGAQQSLPLSKSVRNCVPRSPSGIL 450
           ++C    GD  LLTAG      +++ ++  + N V ++P GIL
Sbjct: 345 DACFSCQGDGLLLTAGM----DKTIQITSMLSNTVVQTPGGIL 383


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,514,051
Number of Sequences: 59808
Number of extensions: 449281
Number of successful extensions: 1314
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)