Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1144
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...    85   3e-17
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...    81   5e-16
Z75545-1|CAB61025.1|  665|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AB000913-1|BAA21715.1|  665|Caenorhabditis elegans UNC-14 protein.     30   1.7  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   4.0  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    28   7.0  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    28   7.0  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    28   7.0  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    28   7.0  
Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical p...    27   9.2  
Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical p...    27   9.2  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 38/46 (82%), Positives = 41/46 (89%)
 Frame = +2

Query: 119 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKT 256
           +D HF TGDSGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSKT
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKT 52



 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
 Frame = +1

Query: 250 QNGKHGHAKFTWLGLISSMVKSMXYICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-AD 426
           + GKHGHAK   + +     K +  ICPSTHNMDVP VKR +Y L  I DDGY +LM  +
Sbjct: 51  KTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPE 109

Query: 427 NGDLREDLKIPDGDLGTQLRTDFD 498
           + + ++DLK+PD +LG Q+R  ++
Sbjct: 110 SCEQKDDLKLPDTELGQQIRDAYE 133


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
 Frame = +1

Query: 250 QNGKHGHAKFTWLGLISSMVKSMXYICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-AD 426
           + GKHGHAK   + +     K +  ICPSTHNMDVP VKR +Y L  I +DG+ +LM  +
Sbjct: 85  KTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPE 143

Query: 427 NGDLREDLKIPDGDLGTQLR 486
           + +L++DLK+P+GDLG  +R
Sbjct: 144 SCELKDDLKMPEGDLGNTIR 163



 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 32/46 (69%), Positives = 40/46 (86%)
 Frame = +2

Query: 119 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKT 256
           ++  F++ +SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSKT
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKT 86


>Z75545-1|CAB61025.1|  665|Caenorhabditis elegans Hypothetical
           protein K10D3.2 protein.
          Length = 665

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -2

Query: 578 ESCVCFDGDDALLTAGFQHGAQQSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 408
           E+C  F  +  LLT+     A Q+   +  V NC+ R  SGI  S+  +  +  RVR
Sbjct: 281 EACSFFKSNTQLLTSSTSKTAPQTS--TNIVSNCIDRRISGISASANEACRTCYRVR 335


>AB000913-1|BAA21715.1|  665|Caenorhabditis elegans UNC-14 protein.
          Length = 665

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -2

Query: 578 ESCVCFDGDDALLTAGFQHGAQQSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 408
           E+C  F  +  LLT+     A Q+   +  V NC+ R  SGI  S+  +  +  RVR
Sbjct: 281 EACSFFKSNTQLLTSSTSKTAPQTS--TNIVSNCIDRRISGISASANEACRTCYRVR 335


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 114 TSKTHTLRPETPGPQPPSPCNVRP 185
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 201 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 109
           +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +3

Query: 84  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCV 191
           V+K  T + ++S T      T    TPGP P +PC+  P V
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDV 189


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +3

Query: 84  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCV 191
           V+K  T + ++S T      T    TPGP P +PC+  P V
Sbjct: 13  VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDV 53


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +3

Query: 84  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCV 191
           V+K  T + ++S T      T    TPGP P +PC+  P V
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDV 207


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +3

Query: 84  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCV 191
           V+K  T + ++S T      T    TPGP P +PC+  P V
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDV 189


>Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical
           protein C41C4.5b protein.
          Length = 887

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -2

Query: 269 WPCFPFWMWTFQ--QSCMDDPSA*RNHFYAG 183
           WPCFP+  W  +    C+D+       FY G
Sbjct: 269 WPCFPYSSWKEKLCSECVDNTGHCPMRFYKG 299


>Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical
           protein C41C4.5a protein.
          Length = 849

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -2

Query: 269 WPCFPFWMWTFQ--QSCMDDPSA*RNHFYAG 183
           WPCFP+  W  +    C+D+       FY G
Sbjct: 231 WPCFPYSSWKEKLCSECVDNTGHCPMRFYKG 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,945,071
Number of Sequences: 27780
Number of extensions: 322973
Number of successful extensions: 933
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)