Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1144
(675 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 25 0.66
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 25 0.66
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 23 2.7
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 4.7
AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding prote... 22 4.7
AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding pro... 22 4.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.1
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 21 8.1
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 25.0 bits (52), Expect = 0.66
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 195 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 100
+LRR C + EAP PV + + S++P+V+
Sbjct: 47 YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 25.0 bits (52), Expect = 0.66
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 195 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 100
+LRR C + EAP PV + + S++P+V+
Sbjct: 47 YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 23.0 bits (47), Expect = 2.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 271 AKFTWLGLISSMVKSMXYIC 330
A TWLG I+S + + Y C
Sbjct: 373 AAVTWLGWINSGMNPVIYAC 392
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 4.7
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 114 TSKTHTLRPETPGPQ 158
T H PETPGPQ
Sbjct: 462 TPHHHPHPPETPGPQ 476
>AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding protein
ASP1 protein.
Length = 144
Score = 22.2 bits (45), Expect = 4.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -3
Query: 574 AVFALTAMTHSSPQDFSTVHNNPCRCRSQYAT 479
A+F A P+ F V + RC S++ T
Sbjct: 20 AIFVNAAPDWVPPEVFDLVAEDKARCMSEHGT 51
>AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding
protein ASP1 protein.
Length = 144
Score = 22.2 bits (45), Expect = 4.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -3
Query: 574 AVFALTAMTHSSPQDFSTVHNNPCRCRSQYAT 479
A+F A P+ F V + RC S++ T
Sbjct: 20 AIFVNAAPDWVPPEVFDLVAEDKARCMSEHGT 51
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 485 RNCVPRSPSGILRSSRRSPLSAIR 414
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 485 RNCVPRSPSGILRSSRRSPLSAIR 414
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 485 RNCVPRSPSGILRSSRRSPLSAIR 414
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 485 RNCVPRSPSGILRSSRRSPLSAIR 414
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 485 RNCVPRSPSGILRSSRRSPLSAIR 414
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 485 RNCVPRSPSGILRSSRRSPLSAIR 414
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 485 RNCVPRSPSGILRSSRRSPLSAIR 414
+N PSG +RS+ +P+S R
Sbjct: 423 KNSAANPPSGYIRSAFGTPISTGR 446
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 485 RNCVPRSPSGILRSSRRSPLSAIR 414
+N PSG +RS+ +P+S R
Sbjct: 423 KNSAANPPSGYIRSAFGTPISTGR 446
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 381 LVVFALHVRYVHVVCG 334
LV FAL +R +VCG
Sbjct: 707 LVTFALVLRPTDIVCG 722
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,328
Number of Sequences: 438
Number of extensions: 4007
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -