Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1143
         (572 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    26   0.26 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   0.80 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   2.4  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   7.5  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 428 YNDIFNRSSIIFQSIKLIHLINFIQYL 508
           +NDIF  S ++  S   +H +N+I  L
Sbjct: 196 FNDIFGISFLLIISYSTLHFVNYIDDL 222


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.2 bits (50), Expect = 0.80
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 329 QSTY*ILNPETYMTNVAAPIYYN 261
           QS   I  P T +TN+  P YYN
Sbjct: 344 QSPNQIYQPVTNLTNLTYPSYYN 366


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 390 VFNYSVTRTFSYNIMTYLIVLVLYS 464
           +F Y + R+F+Y +    I L+ +S
Sbjct: 143 MFQYYIGRSFTYYVCNTTIFLIFHS 167


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 240 KSYNLYLIIIYWSSYVSHVGLRIKN 314
           KS N   + ++W+ Y + +  R+KN
Sbjct: 382 KSANKIAMKLFWAQYTNKMIDRLKN 406


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,140
Number of Sequences: 336
Number of extensions: 1993
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)