Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1143
         (572 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0458 - 34077649-34077849,34077956-34078127,34078803-34079290     29   3.5  
01_02_0086 - 10979236-10979396,10980288-10980798,10984446-109849...    28   4.6  
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928...    28   6.1  
04_04_0176 - 23329589-23331043                                         27   8.0  

>03_06_0458 - 34077649-34077849,34077956-34078127,34078803-34079290
          Length = 286

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/49 (34%), Positives = 31/49 (63%)
 Frame = +3

Query: 69  SGGDAADSAPRVTRAPTITASRVRDHVSSLLVIFYVSVRSVQVMRTTNN 215
           + G+AA +A + TRA  ++ S +R H SSL+++  + + ++ V  TT N
Sbjct: 31  AAGEAA-AAKKATRAWGVSVS-LRSHFSSLVLLLLLLLVALAVSATTKN 77


>01_02_0086 -
           10979236-10979396,10980288-10980798,10984446-10984977,
           10984983-10985002
          Length = 407

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 1   PRPPEPKSTSPARGAPCRLANE--ALAETRRTQLRASLGLQQ 120
           PRPP P S SP   A  +L +E   LA  +R ++     L++
Sbjct: 284 PRPPRPPSASPLDAADQKLISELSELASLKRARIERMKALKK 325


>02_05_0717 +
           31190626-31191234,31191954-31192394,31192699-31192802,
           31193000-31194384,31194508-31194548,31195065-31195133,
           31195335-31195435,31195747-31195825,31195939-31196037,
           31196119-31196187,31197609-31197658,31197749-31197925,
           31198045-31198152,31198224-31198290
          Length = 1132

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 1   PRPPEPKSTSPARGAPCRLANEALAETRRTQLRASLGLQQ*QQAE 135
           P+PP P + S A G+P   +  + AE RR  + A     Q ++ E
Sbjct: 64  PQPPTPSTPSEAEGSPFSSSVGSGAEERRQSVAAERRRSQEEEWE 108


>04_04_0176 - 23329589-23331043
          Length = 484

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 24  NLSCPRRTLPTSERGSGGDAADSAPRVTR 110
           +LSCP   LP    G G D    APR  R
Sbjct: 198 SLSCPPTLLPLGGGGGGDDPHVHAPRAAR 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,004,681
Number of Sequences: 37544
Number of extensions: 188152
Number of successful extensions: 846
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)