Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1143
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57823| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_37499| Best HMM Match : 7tm_1 (HMM E-Value=4e-09)                   30   1.2  
SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)                      29   3.6  
SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)                   28   4.7  
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_57823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 614

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 24  NLSCPRRTLP-TSERGSGGDAADSAPRVTRAPTITAS 131
           N  CP RT+P T +  +  D   +AP + + PT  AS
Sbjct: 385 NYDCPPRTVPSTGDAPANNDPVSNAPMMNKGPTSDAS 421


>SB_37499| Best HMM Match : 7tm_1 (HMM E-Value=4e-09)
          Length = 378

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 72  GGDAADSAPRVTRAPTITASRVRDHVSSLLVIFYVS 179
           GGD AD APR  R       +    + +L+V FYVS
Sbjct: 267 GGDGADRAPRGVRPGPRRDGKFTSAILTLIVCFYVS 302


>SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 105 TRAPTITASRVRDHVSSLLVIFYVSVRSVQVMRTTNNTSMILRSFKSYN 251
           T  P   A     HV         + R + ++R T NT++I R FK++N
Sbjct: 113 TNHPDRIACSGVSHVGISYHSLVYAYRKLSIVRLTKNTTIIYRKFKNFN 161


>SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)
          Length = 260

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/77 (23%), Positives = 37/77 (48%)
 Frame = +3

Query: 144 HVSSLLVIFYVSVRSVQVMRTTNNTSMILRSFKSYNLYLIIIYWSSYVSHVGLRIKNLIC 323
           +V S L +FY +V+  +++ T      IL  + +   +  ++ W+ YV    L   +   
Sbjct: 75  YVFSWLAVFYSAVQFGRIV-TQTRVFAILDQWLTLPFFAWVVCWNEYVYRDYLWQSSRFM 133

Query: 324 TLVKLA*YCYWCELFHN 374
            +++L+   Y   LFH+
Sbjct: 134 FIMRLSILSYAAALFHD 150


>SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 195 VMRTTNNTSMILRSFKSYNLYLIIIYWSSY 284
           +MR       IL  + SYN+Y+II+Y S Y
Sbjct: 649 LMRLKVTLCTILNYYLSYNIYIIILYESIY 678


>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
          Length = 587

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
 Frame = +3

Query: 117 TITASRVRDHVSSLLVIFYVSVRSVQVMRTTNNTSMILRSFKS-YNLYLIIIYWSSYVSH 293
           TIT +     V++ +   Y ++ ++ +  TTN T+++  +  + Y   + I   ++Y + 
Sbjct: 414 TITINNYTTTVNTTITTNYTTIVTITI--TTNYTTIVTITISTNYTTIVTITITTNYTTI 471

Query: 294 VGLRIKNLICTLVKLA*YCYWCELFHNL*L*TVFNYSVTRTFSYNIMTYLIVLVLYSN 467
           V + I     T V       +  +       T+ NY+ T TF+    T ++ + + +N
Sbjct: 472 VTITITTNYTTTVTTTITTNYTTIVTT----TITNYTTTVTFTITNYTTIVPITITTN 525


>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1503

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = +3

Query: 129  SRVRDHVSSLLVIFYVSVRSVQVMRTTNNTSMILRSFKSYNLYLIII 269
            +R R H+ S  V FY  + ++++     + S   ++ ++YN  +++I
Sbjct: 1419 ARYRGHLDSFTVSFYSDIDTIEIRSEDEDGSGASKARRTYNYRVVMI 1465


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,053,684
Number of Sequences: 59808
Number of extensions: 220043
Number of successful extensions: 530
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)