Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1143
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   8.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.7  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 252 LYLIIIYWSSYVSHV 296
           + LII Y+S  VSHV
Sbjct: 224 MILIIYYYSQIVSHV 238


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 305 PETYMTNVAAPIYY 264
           P  Y+  + AP+YY
Sbjct: 331 PSHYIEQIPAPVYY 344


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/40 (22%), Positives = 19/40 (47%)
 Frame = +3

Query: 141 DHVSSLLVIFYVSVRSVQVMRTTNNTSMILRSFKSYNLYL 260
           DH  + ++ +  +  S+   + T     + R +KSY  Y+
Sbjct: 422 DHAKNTIIDYRNNDLSINEEKRTIENEQLNRMYKSYPNYI 461


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 437 IFNRSSIIFQSIKLIHLINFIQYLV 511
           +FN  S+    ++LIH  N+  + V
Sbjct: 361 VFNDGSLYLTKVQLIHAGNYTCHAV 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,696
Number of Sequences: 438
Number of extensions: 2715
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)