Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1143
         (572 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23530.1 68415.m02808 expressed protein ; expression supporte...    32   0.31 
At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger) fa...    30   0.95 
At1g25510.1 68414.m03168 aspartyl protease family protein contai...    29   2.9  
At1g56020.1 68414.m06431 expressed protein                             28   3.8  
At3g20015.1 68416.m02532 aspartyl protease family protein contai...    28   5.1  
At1g53730.1 68414.m06114 leucine-rich repeat transmembrane prote...    27   6.7  

>At2g23530.1 68415.m02808 expressed protein ; expression supported
           by MPSS
          Length = 555

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 160 NKLET*SRTRLAVIVGARVTRGAESAASPPEPRSLVGRVRR 38
           + LET       ++V ARVTR    AA  P P S+ GR+R+
Sbjct: 511 SNLETRLGESQTLVVKARVTRSKRKAALEPNPDSIGGRLRQ 551


>At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 634

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 20/80 (25%), Positives = 35/80 (43%)
 Frame = +3

Query: 15  AKVNLSCPRRTLPTSERGSGGDAADSAPRVTRAPTITASRVRDHVSSLLVIFYVSVRSVQ 194
           A V  +  RRT+   ++G        APRV + P +  ++   HV  +    Y     ++
Sbjct: 76  ASVGNALFRRTVVEKDKGKSISTDPCAPRVEKNPVLNLNQRNGHV-HVAASRYQPSEDIR 134

Query: 195 VMRTTNNTSMILRSFKSYNL 254
            +RT+N  S +     S+ L
Sbjct: 135 ELRTSNGCSPLRGDHNSFVL 154


>At1g25510.1 68414.m03168 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 483

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 27  LSCPRRTLPTSERGSGGDAADSAPRVTRAPTITASRVRD 143
           L  P+ +    E GSGG   DS   VTR  T   + +RD
Sbjct: 343 LQIPQSSFEMDESGSGGIIIDSGTAVTRLQTEIYNSLRD 381


>At1g56020.1 68414.m06431 expressed protein
          Length = 398

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 18  KVNLSCPRRTLPTSERGSGGDAADSAPRVTRAPTITASRVRDHVSSLLV 164
           ++ L+ PRR  P S     G ++ SA   +R  T+TA   R + S  +V
Sbjct: 251 RIRLAKPRRNHPPSTPSVDGSSSSSACIESRGLTVTADSPRLNASGKIV 299


>At3g20015.1 68416.m02532 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 386

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +3

Query: 21  VNLSCPRRTLPTSERGSGGDAADSAPRVTRAPTITASRVRDHVSS 155
           V +  P      +E G GG   D+   VTR PT      RD   S
Sbjct: 244 VRIPLPDGVFDLTETGDGGVVMDTGTAVTRLPTAAYVAFRDGFKS 288


>At1g53730.1 68414.m06114 leucine-rich repeat transmembrane protein
           kinase, putative similar to GI:3360289 from [Zea mays]
           (Plant Mol. Biol. 37 (5), 749-761 (1998))
          Length = 719

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 1   PRPPEPKSTSPARGAPCR 54
           P PP P  T P RG+P R
Sbjct: 248 PAPPPPPGTPPIRGSPSR 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,933,976
Number of Sequences: 28952
Number of extensions: 149358
Number of successful extensions: 319
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)