Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1142
(737 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D56583 Cluster: PREDICTED: similar to CG10122-PA... 134 2e-30
UniRef50_Q16K29 Cluster: DNA-directed RNA polymerase; n=1; Aedes... 117 3e-25
UniRef50_P91875 Cluster: DNA-directed RNA polymerase I subunit R... 112 7e-24
UniRef50_UPI00015B5184 Cluster: PREDICTED: similar to DNA-direct... 111 2e-23
UniRef50_UPI0000DB7146 Cluster: PREDICTED: similar to RNA polyme... 107 3e-22
UniRef50_O95602 Cluster: DNA-directed RNA polymerase I subunit R... 103 3e-21
UniRef50_UPI0000ECC670 Cluster: DNA-directed RNA polymerase I la... 99 1e-19
UniRef50_A7S9W9 Cluster: Predicted protein; n=1; Nematostella ve... 97 3e-19
UniRef50_UPI0000E46841 Cluster: PREDICTED: similar to RNA polyme... 95 2e-18
UniRef50_UPI0000F1FC15 Cluster: PREDICTED: similar to polymerase... 89 1e-16
UniRef50_A1CP71 Cluster: DNA-directed RNA polymerase; n=8; Eurot... 72 2e-11
UniRef50_Q5KIF6 Cluster: DNA-directed RNA polymerase; n=1; Filob... 70 5e-11
UniRef50_A7PWB4 Cluster: Chromosome chr8 scaffold_34, whole geno... 69 9e-11
UniRef50_A5BD07 Cluster: DNA-directed RNA polymerase; n=1; Vitis... 69 9e-11
UniRef50_A6R8S3 Cluster: DNA-directed RNA polymerase; n=1; Ajell... 66 6e-10
UniRef50_Q9SVY0 Cluster: DNA-directed RNA polymerase I 190K chai... 65 1e-09
UniRef50_P10964 Cluster: DNA-directed RNA polymerase I subunit R... 65 1e-09
UniRef50_P15398 Cluster: DNA-directed RNA polymerase I subunit R... 65 2e-09
UniRef50_Q00WA2 Cluster: DNA-directed RNA polymerase; n=2; Ostre... 64 3e-09
UniRef50_Q5TMU2 Cluster: DNA-directed RNA polymerase; n=1; Anoph... 64 3e-09
UniRef50_Q6C1S4 Cluster: DNA-directed RNA polymerase; n=1; Yarro... 64 3e-09
UniRef50_UPI00004998AA Cluster: DNA-directed RNA polymerase I la... 64 5e-09
UniRef50_A0DJB3 Cluster: DNA-directed RNA polymerase; n=2; Oligo... 62 1e-08
UniRef50_Q69X40 Cluster: DNA-directed RNA polymerase; n=6; Oryza... 61 2e-08
UniRef50_Q553A1 Cluster: DNA-directed RNA polymerase; n=2; Dicty... 60 4e-08
UniRef50_A4RCX8 Cluster: DNA-directed RNA polymerase; n=3; Sorda... 60 6e-08
UniRef50_Q23DD6 Cluster: DNA-directed RNA polymerase; n=1; Tetra... 60 7e-08
UniRef50_A6SJ73 Cluster: DNA-directed RNA polymerase; n=2; Scler... 59 1e-07
UniRef50_O17628 Cluster: DNA-directed RNA polymerase; n=3; Caeno... 59 1e-07
UniRef50_Q7RWI3 Cluster: DNA-directed RNA polymerase; n=4; Peziz... 59 1e-07
UniRef50_P04050 Cluster: DNA-directed RNA polymerase II subunit ... 59 1e-07
UniRef50_A3FQH3 Cluster: DNA-directed RNA polymerase; n=2; Crypt... 58 2e-07
UniRef50_A2GJD3 Cluster: DNA-directed RNA polymerase; n=3; Trich... 58 2e-07
UniRef50_Q4PB85 Cluster: DNA-directed RNA polymerase; n=1; Ustil... 58 2e-07
UniRef50_Q8SSC4 Cluster: DNA-directed RNA polymerase II subunit ... 57 4e-07
UniRef50_A3BPR9 Cluster: DNA-directed RNA polymerase; n=7; Magno... 56 7e-07
UniRef50_A1RWW4 Cluster: DNA-directed RNA polymerase, subunit A'... 56 9e-07
UniRef50_Q4SF83 Cluster: DNA-directed RNA polymerase; n=1; Tetra... 56 1e-06
UniRef50_A5K7T9 Cluster: DNA-directed RNA polymerase; n=1; Plasm... 56 1e-06
UniRef50_P16355 Cluster: DNA-directed RNA polymerase I subunit R... 56 1e-06
UniRef50_Q9AXN0 Cluster: DNA-directed RNA polymerase; n=4; Eukar... 55 2e-06
UniRef50_Q7RQQ6 Cluster: DNA-directed RNA polymerase; n=9; Plasm... 55 2e-06
UniRef50_Q7RJK4 Cluster: DNA-directed RNA polymerase; n=13; Euka... 55 2e-06
UniRef50_Q4D133 Cluster: DNA-directed RNA polymerase; n=7; Trypa... 55 2e-06
UniRef50_Q8TCW3 Cluster: DNA-directed RNA polymerase; n=17; Meta... 55 2e-06
UniRef50_P27625 Cluster: DNA-directed RNA polymerase III subunit... 55 2e-06
UniRef50_O14802 Cluster: DNA-directed RNA polymerase III subunit... 55 2e-06
UniRef50_Q7YYV9 Cluster: DNA-directed RNA polymerase; n=3; Crypt... 55 2e-06
UniRef50_Q8SS15 Cluster: DNA-directed RNA polymerase; n=1; Encep... 55 2e-06
UniRef50_P24928 Cluster: DNA-directed RNA polymerase II subunit ... 55 2e-06
UniRef50_Q4N0F9 Cluster: DNA-directed RNA polymerase II largest ... 54 3e-06
UniRef50_Q2N100 Cluster: RNA polymerase I large subunit; n=1; Ap... 54 3e-06
UniRef50_Q27095 Cluster: DNA-directed RNA polymerase; n=2; Trich... 54 3e-06
UniRef50_A5K7P4 Cluster: DNA-directed RNA polymerase; n=13; Euka... 54 3e-06
UniRef50_Q84KP6 Cluster: DNA-directed RNA polymerase; n=3; Eukar... 54 4e-06
UniRef50_Q4UI00 Cluster: DNA-directed RNA polymerase; n=2; Theil... 54 4e-06
UniRef50_Q9YAU2 Cluster: DNA-directed RNA polymerase subunit A''... 54 4e-06
UniRef50_P14248 Cluster: DNA-directed RNA polymerase II subunit ... 54 4e-06
UniRef50_Q7R0K2 Cluster: DNA-directed RNA polymerase; n=1; Giard... 54 5e-06
UniRef50_Q3SE61 Cluster: DNA-directed RNA polymerase; n=2; Param... 54 5e-06
UniRef50_Q26008 Cluster: DNA-directed RNA polymerase; n=2; Plasm... 54 5e-06
UniRef50_A5KB21 Cluster: DNA-directed RNA polymerase; n=1; Plasm... 54 5e-06
UniRef50_O28390 Cluster: DNA-directed RNA polymerase subunit A''... 54 5e-06
UniRef50_P08968 Cluster: DNA-directed RNA polymerase III subunit... 54 5e-06
UniRef50_A5DCV3 Cluster: DNA-directed RNA polymerase II subunit ... 54 5e-06
UniRef50_A6SCV1 Cluster: DNA-directed RNA polymerase; n=19; Fung... 53 6e-06
UniRef50_Q9AW39 Cluster: DNA-directed RNA polymerase; n=1; Guill... 53 8e-06
UniRef50_Q3LWE3 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 53 8e-06
UniRef50_Q010D7 Cluster: DNA-directed RNA polymerase; n=4; Eukar... 53 8e-06
UniRef50_Q8MX30 Cluster: DNA-directed RNA polymerase; n=1; Naegl... 53 8e-06
UniRef50_A7AWJ0 Cluster: DNA-directed RNA polymerase II largest ... 53 8e-06
UniRef50_A7AP17 Cluster: RNA polymerase Rpb1, domain containing ... 53 8e-06
UniRef50_Q74MX8 Cluster: NEQ427; n=1; Nanoarchaeum equitans|Rep:... 53 8e-06
UniRef50_UPI00006CF1E9 Cluster: RNA polymerase Rpb1, domain 2 fa... 52 1e-05
UniRef50_UPI000049A544 Cluster: DNA-directed RNA polymerase III ... 52 1e-05
UniRef50_Q5CUJ2 Cluster: DNA-directed RNA polymerase; n=3; Eukar... 52 1e-05
UniRef50_P04051 Cluster: DNA-directed RNA polymerase III subunit... 52 1e-05
UniRef50_Q9VXP9 Cluster: DNA-directed RNA polymerase; n=4; Dipte... 51 3e-05
UniRef50_A2DEX5 Cluster: DNA-directed RNA polymerase; n=1; Trich... 51 3e-05
UniRef50_Q6E6G2 Cluster: DNA-directed RNA polymerase; n=1; Anton... 51 3e-05
UniRef50_P17545 Cluster: DNA-directed RNA polymerase II subunit ... 51 3e-05
UniRef50_Q9BMP2 Cluster: DNA-directed RNA polymerase; n=2; Stylo... 51 3e-05
UniRef50_Q8MUU2 Cluster: DNA-directed RNA polymerase; n=4; Giard... 51 3e-05
UniRef50_Q7RXJ6 Cluster: DNA-directed RNA polymerase; n=4; root|... 51 3e-05
UniRef50_P29158 Cluster: DNA-directed RNA polymerase subunit A''... 51 3e-05
UniRef50_Q4QEN2 Cluster: DNA-directed RNA polymerase I largest s... 50 5e-05
UniRef50_O77165 Cluster: DNA-directed RNA polymerase; n=4; Eukar... 50 5e-05
UniRef50_Q0V3B7 Cluster: DNA-directed RNA polymerase; n=2; Ascom... 50 5e-05
UniRef50_O27126 Cluster: DNA-directed RNA polymerase subunit A''... 50 5e-05
UniRef50_Q91FI1 Cluster: 343L; n=1; Invertebrate iridescent viru... 50 8e-05
UniRef50_Q0PQ09 Cluster: DNA-directed RNA polymerase; n=8; Peziz... 50 8e-05
UniRef50_O96452 Cluster: DNA-directed RNA polymerase; n=1; Anton... 50 8e-05
UniRef50_P15354 Cluster: DNA-directed RNA polymerase subunit A''... 50 8e-05
UniRef50_Q9AVW8 Cluster: DNA-directed RNA polymerase II largest ... 49 1e-04
UniRef50_Q58446 Cluster: DNA-directed RNA polymerase subunit A''... 49 1e-04
UniRef50_O94666 Cluster: DNA-directed RNA polymerase III subunit... 49 1e-04
UniRef50_Q4U940 Cluster: DNA-directed RNA polymerase III largest... 49 1e-04
UniRef50_Q8SRM3 Cluster: DNA-directed RNA polymerase; n=1; Encep... 49 1e-04
UniRef50_A7ARZ5 Cluster: DNA directed RNA polymerase; n=1; Babes... 48 2e-04
UniRef50_Q6IUR3 Cluster: DNA-directed RNA polymerase; n=3; Entam... 48 2e-04
UniRef50_Q2N124 Cluster: RNA polymerase III large subunit; n=1; ... 48 2e-04
UniRef50_P25202 Cluster: DNA-directed RNA polymerase III subunit... 48 2e-04
UniRef50_Q54ZZ2 Cluster: DNA-directed RNA polymerase; n=2; Dicty... 48 3e-04
UniRef50_Q7VJ82 Cluster: Bifunctional DNA-directed RNA polymeras... 48 3e-04
UniRef50_Q9LVH0 Cluster: DNA-directed RNA polymerase; n=11; Euph... 47 6e-04
UniRef50_Q01DV6 Cluster: DNA-directed RNA polymerase; n=15; Euka... 47 6e-04
UniRef50_Q06VH1 Cluster: RNA polymerase II; n=1; Trichoplusia ni... 46 7e-04
UniRef50_Q2TUP1 Cluster: DNA-directed RNA polymerase; n=8; Sperm... 46 0.001
UniRef50_A7J5B4 Cluster: RNA polymerase II largest subunit; n=61... 46 0.001
UniRef50_Q6F0L8 Cluster: DNA-directed RNA polymerase subunit bet... 46 0.001
UniRef50_Q196X0 Cluster: DNA-directed RNA polymerase; n=1; Aedes... 45 0.002
UniRef50_Q3SE62 Cluster: DNA-directed RNA polymerase; n=3; Param... 45 0.002
UniRef50_Q4A369 Cluster: DNA-directed RNA polymerase; n=1; Emili... 45 0.002
UniRef50_Q03586 Cluster: DNA-directed RNA polymerase subunit A''... 45 0.002
UniRef50_Q8ZYQ7 Cluster: DNA-directed RNA polymerase subunit A''... 44 0.004
UniRef50_Q2TUP4 Cluster: DNA-directed RNA polymerase; n=2; basal... 44 0.005
UniRef50_Q20EX3 Cluster: DNA-directed RNA polymerase; n=1; Oltma... 44 0.005
UniRef50_Q0LJX1 Cluster: DNA-directed RNA polymerase, subunit be... 43 0.007
UniRef50_Q98RN1 Cluster: DNA-directed RNA polymerase; n=1; Guill... 43 0.007
UniRef50_Q8IDW5 Cluster: Putative uncharacterized protein PF13_0... 43 0.007
UniRef50_Q39KH4 Cluster: DNA-directed RNA polymerase subunit bet... 43 0.007
UniRef50_Q7PCJ6 Cluster: DNA-directed RNA polymerase subunit bet... 43 0.007
UniRef50_Q1KVX8 Cluster: DNA-directed RNA polymerase; n=1; Scene... 43 0.009
UniRef50_Q19VA0 Cluster: DNA-directed RNA polymerase; n=1; Chlor... 43 0.009
UniRef50_Q06SF2 Cluster: DNA-directed RNA polymerase; n=1; Stige... 43 0.009
UniRef50_Q7MX26 Cluster: DNA-directed RNA polymerase subunit bet... 43 0.009
UniRef50_O67763 Cluster: DNA-directed RNA polymerase subunit bet... 43 0.009
UniRef50_Q9TL04 Cluster: DNA-directed RNA polymerase subunit bet... 43 0.009
UniRef50_O78483 Cluster: DNA-directed RNA polymerase subunit bet... 43 0.009
UniRef50_Q8PUR2 Cluster: DNA-directed RNA polymerase subunit A''... 43 0.009
UniRef50_Q110H3 Cluster: DNA-directed RNA polymerase, beta'' sub... 42 0.012
UniRef50_A6DPM8 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.012
UniRef50_A5USR6 Cluster: DNA-directed RNA polymerase; n=4; Chlor... 42 0.012
UniRef50_Q0P3M4 Cluster: DNA-directed RNA polymerase; n=1; Ostre... 42 0.012
UniRef50_A6YGE2 Cluster: DNA-directed RNA polymerase; n=1; Lepto... 42 0.012
UniRef50_Q22M85 Cluster: DNA-directed RNA polymerase; n=1; Tetra... 42 0.012
UniRef50_A0T0D9 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.012
UniRef50_P23581 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.012
UniRef50_Q1ACN4 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.012
UniRef50_P22705 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.012
UniRef50_Q83066 Cluster: DNA-directed RNA polymerase; n=3; Lymph... 42 0.016
UniRef50_A4M8H7 Cluster: DNA-directed RNA polymerase; n=1; Petro... 42 0.016
UniRef50_Q8LLJ6 Cluster: DNA-directed RNA polymerase; n=1; Ochro... 42 0.016
UniRef50_Q3LWD4 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 42 0.016
UniRef50_Q2EEX0 Cluster: DNA-directed RNA polymerase; n=1; Helic... 42 0.016
UniRef50_Q2LQ86 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.016
UniRef50_Q8KG14 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.016
UniRef50_Q32RG2 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.016
UniRef50_Q0E534 Cluster: 52.2 kDa DNA-directed RNA polymerase II... 42 0.021
UniRef50_A7HNY1 Cluster: DNA-directed RNA polymerase, beta' subu... 42 0.021
UniRef50_A6PR79 Cluster: DNA-directed RNA polymerase, beta' subu... 42 0.021
UniRef50_A5Z8Z4 Cluster: DNA-directed RNA polymerase; n=2; Bacte... 42 0.021
UniRef50_Q82DQ4 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.021
UniRef50_Q9CK92 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.021
UniRef50_Q2RFP0 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.021
UniRef50_Q7VKL8 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.021
UniRef50_Q890N5 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.021
UniRef50_Q9Z999 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.021
UniRef50_Q7VRP8 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.021
UniRef50_A0T0Q9 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.021
UniRef50_Q8WI26 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.021
UniRef50_Q7VA30 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.021
UniRef50_P49468 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.021
UniRef50_Q9MUS7 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.021
UniRef50_Q6B8R6 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.021
UniRef50_P48120 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.021
UniRef50_P12465 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.021
UniRef50_Q8MA10 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.021
UniRef50_Q06J19 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 41 0.028
UniRef50_A0NE83 Cluster: ENSANGP00000031674; n=3; Diptera|Rep: E... 41 0.028
UniRef50_Q6YQW2 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.028
UniRef50_Q4A5S8 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.028
UniRef50_Q2W2I2 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.028
UniRef50_Q5FTX8 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.028
UniRef50_Q3ZJ90 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.028
UniRef50_Q4G3A5 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.028
UniRef50_Q9TM34 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.028
UniRef50_A3ZLH7 Cluster: DNA-directed RNA polymerase; n=2; Planc... 41 0.036
UniRef50_Q5SCY0 Cluster: DNA-directed RNA polymerase; n=2; Embry... 41 0.036
UniRef50_Q019H0 Cluster: Putative p40; n=1; Ostreococcus tauri|R... 41 0.036
UniRef50_A7QYV9 Cluster: Chromosome chr6 scaffold_256, whole gen... 41 0.036
UniRef50_A2G2I8 Cluster: Mitotic apparatus protein, putative; n=... 41 0.036
UniRef50_Q9BHM4 Cluster: DNA-directed RNA polymerase; n=1; Pleis... 41 0.036
UniRef50_P36252 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.036
UniRef50_Q8RHI7 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.036
UniRef50_P41606 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.036
UniRef50_P60290 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.036
UniRef50_P06274 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.036
UniRef50_P16025 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.036
UniRef50_P56764 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.036
UniRef50_Q85C71 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.036
UniRef50_P60289 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.036
UniRef50_Q85FM9 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.036
UniRef50_UPI0000ECBC5B Cluster: UPI0000ECBC5B related cluster; n... 40 0.048
UniRef50_Q00Z17 Cluster: Chromosome 11 contig 1, DNA sequence; n... 40 0.048
UniRef50_A7P7C3 Cluster: Chromosome chr9 scaffold_7, whole genom... 40 0.048
UniRef50_Q16QI0 Cluster: Ribosomal RNA small subunit methyltrans... 40 0.048
UniRef50_Q9BHJ4 Cluster: DNA-directed RNA polymerase; n=2; Trach... 40 0.048
UniRef50_Q73JJ8 Cluster: DNA-directed RNA polymerase subunit bet... 40 0.048
UniRef50_Q8R7U7 Cluster: DNA-directed RNA polymerase subunit bet... 40 0.048
UniRef50_Q97NQ8 Cluster: DNA-directed RNA polymerase subunit bet... 40 0.048
UniRef50_Q9RVW0 Cluster: DNA-directed RNA polymerase subunit bet... 40 0.048
UniRef50_Q8G515 Cluster: DNA-directed RNA polymerase subunit bet... 40 0.048
UniRef50_Q3LWH2 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 40 0.064
UniRef50_Q9BHM2 Cluster: DNA-directed RNA polymerase; n=5; Pleis... 40 0.064
UniRef50_P95405 Cluster: DNA-directed RNA polymerase subunit bet... 40 0.064
UniRef50_Q98Q24 Cluster: DNA-directed RNA polymerase subunit bet... 40 0.064
UniRef50_Q01GY9 Cluster: Chromosome 01 contig 1, DNA sequence; n... 40 0.084
UniRef50_A6SHP4 Cluster: Putative uncharacterized protein; n=2; ... 40 0.084
UniRef50_A3KNR8 Cluster: Si:ch211-240j22.5 protein; n=4; Danio r... 39 0.11
UniRef50_Q8KTP7 Cluster: DNA-directed RNA polymerase; n=1; Candi... 39 0.11
UniRef50_O77320 Cluster: Putative uncharacterized protein MAL3P3... 39 0.11
UniRef50_A5K5Y1 Cluster: RAD protein; n=1; Plasmodium vivax|Rep:... 39 0.11
UniRef50_Q9BHZ7 Cluster: DNA-directed RNA polymerase; n=2; Gluge... 39 0.11
UniRef50_P13816 Cluster: Glutamic acid-rich protein precursor; n... 39 0.11
UniRef50_UPI0000F214E8 Cluster: PREDICTED: hypothetical protein;... 39 0.15
UniRef50_Q8I1X1 Cluster: Lysine decarboxylase, putative; n=1; Pl... 39 0.15
UniRef50_Q176R3 Cluster: Fruitless; n=1; Aedes aegypti|Rep: Frui... 39 0.15
UniRef50_O21238 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 39 0.15
UniRef50_Q6BRI6 Cluster: Similar to CA5675|CaSIS2 Candida albica... 39 0.15
UniRef50_P47582 Cluster: DNA-directed RNA polymerase subunit bet... 39 0.15
UniRef50_Q6YHB9 Cluster: DNA-directed RNA polymerase; n=5; Ranav... 38 0.19
UniRef50_A5CTW5 Cluster: Putative uncharacterized protein; n=1; ... 38 0.19
UniRef50_Q7RIE7 Cluster: Putative uncharacterized protein PY0367... 38 0.19
UniRef50_Q76K52 Cluster: Shell matrix protein; n=1; Pinctada fuc... 38 0.19
UniRef50_Q23EG5 Cluster: Papain family cysteine protease contain... 38 0.19
UniRef50_O97291 Cluster: Putative uncharacterized protein MAL3P7... 38 0.19
UniRef50_A5KC27 Cluster: Putative uncharacterized protein; n=3; ... 38 0.19
UniRef50_Q6CGN4 Cluster: Similarity; n=4; Eukaryota|Rep: Similar... 38 0.19
UniRef50_Q5B7C9 Cluster: Putative uncharacterized protein; n=1; ... 38 0.19
UniRef50_Q9PQV5 Cluster: DNA-directed RNA polymerase subunit bet... 38 0.19
UniRef50_Q3ZX00 Cluster: DNA-directed RNA polymerase subunit bet... 38 0.19
UniRef50_Q5YF58 Cluster: DNA-directed RNA polymerase; n=6; Irido... 38 0.26
UniRef50_Q8I5N1 Cluster: Putative uncharacterized protein; n=1; ... 38 0.26
UniRef50_Q8I511 Cluster: DEAD/DEAH box helicase, putative; n=6; ... 38 0.26
UniRef50_Q5Y828 Cluster: Putative uncharacterized protein; n=9; ... 38 0.26
UniRef50_Q4QII8 Cluster: Nucleolar RNA-binding protein, putative... 38 0.26
UniRef50_Q2N0X2 Cluster: RNA polymerase III large subunit; n=1; ... 38 0.26
UniRef50_A2DDX6 Cluster: Putative uncharacterized protein; n=1; ... 38 0.26
UniRef50_UPI0000F215EE Cluster: PREDICTED: similar to Rex2 prote... 38 0.34
UniRef50_UPI000023D739 Cluster: hypothetical protein FG05595.1; ... 38 0.34
UniRef50_Q4RJP2 Cluster: Chromosome 13 SCAF15035, whole genome s... 38 0.34
UniRef50_Q9AIH0 Cluster: DNA-directed RNA polymerase; n=17; Cand... 38 0.34
UniRef50_A6NYC6 Cluster: DNA-directed RNA polymerase; n=1; Bacte... 38 0.34
UniRef50_A4S7X1 Cluster: Predicted protein; n=2; Ostreococcus|Re... 38 0.34
UniRef50_Q8IJG6 Cluster: Putative uncharacterized protein; n=1; ... 38 0.34
UniRef50_Q8I5N5 Cluster: GTP-binding protein, putative; n=2; Pla... 38 0.34
UniRef50_Q86IW7 Cluster: Similar to Mus musculus (Mouse). 13 day... 38 0.34
UniRef50_Q6LFC8 Cluster: Putative uncharacterized protein; n=3; ... 38 0.34
UniRef50_Q57YF7 Cluster: Nucleolar RNA-binding protein, putative... 38 0.34
UniRef50_A5K2T3 Cluster: Putative uncharacterized protein; n=1; ... 38 0.34
UniRef50_Q7RWI2 Cluster: Predicted protein; n=1; Neurospora cras... 38 0.34
UniRef50_Q6C7H0 Cluster: Similar to sp|P39985 Saccharomyces cere... 38 0.34
UniRef50_A3LXS0 Cluster: Phosphopantothenoylcysteine decarboxyla... 38 0.34
UniRef50_Q8TXI9 Cluster: DNA-directed RNA polymerase largest sub... 38 0.34
UniRef50_Q32RY2 Cluster: DNA-directed RNA polymerase subunit bet... 38 0.34
UniRef50_UPI0000F1F54D Cluster: PREDICTED: hypothetical protein,... 37 0.45
UniRef50_UPI0000E48741 Cluster: PREDICTED: similar to mapmodulin... 37 0.45
UniRef50_UPI0000E480B8 Cluster: PREDICTED: similar to diacylglyc... 37 0.45
UniRef50_UPI0000DB6C8A Cluster: PREDICTED: similar to nucleolin;... 37 0.45
UniRef50_UPI0000D57475 Cluster: PREDICTED: similar to CG15239-PA... 37 0.45
UniRef50_UPI0000D56D38 Cluster: PREDICTED: similar to CG6611-PA,... 37 0.45
UniRef50_Q5KQG2 Cluster: Putative histone deacetylase HD2; n=2; ... 37 0.45
UniRef50_Q01AZ8 Cluster: Chromosome 04 contig 1, DNA sequence; n... 37 0.45
UniRef50_A4RTW3 Cluster: Predicted protein; n=1; Ostreococcus lu... 37 0.45
UniRef50_Q94649 Cluster: AARP2 protein; n=6; Plasmodium|Rep: AAR... 37 0.45
UniRef50_Q8ILH5 Cluster: Putative uncharacterized protein; n=2; ... 37 0.45
UniRef50_Q8IBH2 Cluster: Putative uncharacterized protein MAL7P1... 37 0.45
UniRef50_Q8I635 Cluster: Putative uncharacterized protein; n=1; ... 37 0.45
UniRef50_Q7Q6B1 Cluster: ENSANGP00000013531; n=1; Anopheles gamb... 37 0.45
UniRef50_Q76F73 Cluster: Flap endonuclease-1; n=2; Agaricomycoti... 37 0.45
UniRef50_A7TLB3 Cluster: Putative uncharacterized protein; n=1; ... 37 0.45
UniRef50_A7EI09 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 37 0.45
UniRef50_A6SBK8 Cluster: Predicted protein; n=1; Botryotinia fuc... 37 0.45
UniRef50_A5E6P8 Cluster: Putative uncharacterized protein; n=1; ... 37 0.45
UniRef50_P42486 Cluster: DNA-directed RNA polymerase subunit 1; ... 37 0.45
UniRef50_UPI0000F2EAE8 Cluster: PREDICTED: hypothetical protein,... 37 0.59
UniRef50_Q803E1 Cluster: Zgc:55870; n=5; Euteleostomi|Rep: Zgc:5... 37 0.59
UniRef50_A7BVC2 Cluster: DNA-directed RNA polymerase, beta' subu... 37 0.59
UniRef50_A7BS32 Cluster: Sensor kinase protein; n=2; Beggiatoa|R... 37 0.59
UniRef50_A4E9H2 Cluster: DNA-directed RNA polymerase; n=1; Colli... 37 0.59
UniRef50_Q0J2L9 Cluster: Os09g0325100 protein; n=9; Eukaryota|Re... 37 0.59
UniRef50_Q8IJE1 Cluster: Putative uncharacterized protein; n=1; ... 37 0.59
UniRef50_Q8I551 Cluster: Putative uncharacterized protein; n=1; ... 37 0.59
UniRef50_Q7RC64 Cluster: Immediate early protein homolog; n=1; P... 37 0.59
UniRef50_Q556X0 Cluster: Putative uncharacterized protein; n=2; ... 37 0.59
UniRef50_A5K3Z9 Cluster: KS1 protein, putative; n=1; Plasmodium ... 37 0.59
UniRef50_A0DQX6 Cluster: Chromosome undetermined scaffold_6, who... 37 0.59
UniRef50_Q4PGM9 Cluster: Putative uncharacterized protein; n=1; ... 37 0.59
UniRef50_Q4PDW9 Cluster: Putative uncharacterized protein; n=1; ... 37 0.59
UniRef50_A2Q8J5 Cluster: Function: mixed-linked glucanases precu... 37 0.59
UniRef50_Q5MJ10 Cluster: Sperm protein associated with the nucle... 37 0.59
UniRef50_UPI00015B5FAD Cluster: PREDICTED: hypothetical protein;... 36 0.78
UniRef50_UPI0000F2D92F Cluster: PREDICTED: hypothetical protein;... 36 0.78
UniRef50_UPI0000DB79DE Cluster: PREDICTED: similar to Numb-assoc... 36 0.78
UniRef50_UPI000023EEE9 Cluster: hypothetical protein FG10256.1; ... 36 0.78
UniRef50_Q1LV83 Cluster: Novel protein; n=4; Danio rerio|Rep: No... 36 0.78
UniRef50_Q5FNH4 Cluster: Putative phage protein; n=1; Gluconobac... 36 0.78
UniRef50_A7BLC2 Cluster: MORN repeat family protein; n=2; Beggia... 36 0.78
UniRef50_A3IJL9 Cluster: Putative uncharacterized protein; n=1; ... 36 0.78
UniRef50_Q8IQT4 Cluster: CG14073-PB, isoform B; n=3; Drosophila ... 36 0.78
UniRef50_Q8IIC7 Cluster: Putative uncharacterized protein; n=3; ... 36 0.78
UniRef50_Q8IDR5 Cluster: Casein kinase II regulatory subunit, pu... 36 0.78
UniRef50_Q8I5W9 Cluster: Putative uncharacterized protein; n=1; ... 36 0.78
UniRef50_Q8I3Z3 Cluster: Putative uncharacterized protein PFE056... 36 0.78
UniRef50_Q7RR19 Cluster: Putative uncharacterized protein PY0091... 36 0.78
UniRef50_Q7RIK4 Cluster: Krox-like protein-related; n=1; Plasmod... 36 0.78
UniRef50_Q7RDA2 Cluster: Krox-like protein; n=3; Plasmodium (Vin... 36 0.78
UniRef50_Q7RCM9 Cluster: Putative uncharacterized protein PY0574... 36 0.78
UniRef50_Q6LF76 Cluster: Putative uncharacterized protein; n=1; ... 36 0.78
UniRef50_Q5CFH2 Cluster: RNA polymerase A/beta'/A'' subunit; n=1... 36 0.78
UniRef50_Q55C97 Cluster: Putative uncharacterized protein; n=1; ... 36 0.78
UniRef50_Q54QC7 Cluster: Putative uncharacterized protein; n=1; ... 36 0.78
UniRef50_A5KE21 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 0.78
UniRef50_A5K7K1 Cluster: Putative uncharacterized protein; n=4; ... 36 0.78
UniRef50_Q758S9 Cluster: AEL327Wp; n=2; Saccharomycetaceae|Rep: ... 36 0.78
UniRef50_Q6CMR1 Cluster: Similarities with sp|P36076 Saccharomyc... 36 0.78
UniRef50_Q5UPA5 Cluster: Putative KilA-N domain-containing prote... 36 0.78
UniRef50_P13285 Cluster: Latent membrane protein 2; n=44; Lympho... 36 0.78
UniRef50_UPI0000F2CB88 Cluster: PREDICTED: hypothetical protein;... 36 1.0
UniRef50_UPI00005100A7 Cluster: COG1530: Ribonucleases G and E; ... 36 1.0
UniRef50_UPI000023D29D Cluster: hypothetical protein FG06647.1; ... 36 1.0
UniRef50_Q01DE6 Cluster: Cytoskeleton-associated protein and rel... 36 1.0
UniRef50_Q00SY0 Cluster: RNA-binding protein La; n=2; Ostreococc... 36 1.0
UniRef50_A5BP08 Cluster: Putative uncharacterized protein; n=1; ... 36 1.0
UniRef50_A3BKL2 Cluster: Putative uncharacterized protein; n=3; ... 36 1.0
UniRef50_Q8ILN4 Cluster: Putative uncharacterized protein; n=1; ... 36 1.0
UniRef50_Q8IDN9 Cluster: Putative uncharacterized protein PF13_0... 36 1.0
UniRef50_Q8I331 Cluster: Putative uncharacterized protein PFI059... 36 1.0
UniRef50_Q7YN59 Cluster: RNA polymerase C2; n=1; Eimeria tenella... 36 1.0
UniRef50_Q75JP0 Cluster: Similar to Plasmodium falciparum (Isola... 36 1.0
UniRef50_A4VDB3 Cluster: Putative uncharacterized protein; n=1; ... 36 1.0
UniRef50_A2DRU3 Cluster: Ankyrin repeat protein, putative; n=388... 36 1.0
UniRef50_Q7S8E3 Cluster: Predicted protein; n=1; Neurospora cras... 36 1.0
UniRef50_Q75EE1 Cluster: AAR140Wp; n=2; Saccharomycetaceae|Rep: ... 36 1.0
UniRef50_Q2U728 Cluster: Predicted alpha/beta hydrolase; n=1; As... 36 1.0
UniRef50_A1D324 Cluster: GTP-binding protein; n=5; Pezizomycotin... 36 1.0
UniRef50_A1CQZ1 Cluster: RLI and DUF367 domain protein; n=10; Pe... 36 1.0
UniRef50_Q18EX7 Cluster: DNA-directed RNA polymerase subunit A''... 36 1.0
UniRef50_P38835 Cluster: PH domain-containing protein YHR131C; n... 36 1.0
UniRef50_P09620 Cluster: Carboxypeptidase KEX1 precursor; n=3; S... 36 1.0
UniRef50_UPI0000F1FC39 Cluster: PREDICTED: hypothetical protein,... 36 1.4
UniRef50_UPI0000DD80E9 Cluster: PREDICTED: similar to High mobil... 36 1.4
UniRef50_Q6DC28 Cluster: Bms1l protein; n=6; Deuterostomia|Rep: ... 36 1.4
UniRef50_Q1GN97 Cluster: Ribonuclease, Rne/Rng family; n=7; Sphi... 36 1.4
UniRef50_A6FY97 Cluster: Type IV pilin biogenesis protein, putat... 36 1.4
UniRef50_Q9LNZ0 Cluster: F9C16.28; n=11; Arabidopsis thaliana|Re... 36 1.4
UniRef50_Q1PF24 Cluster: Zinc finger protein-like protein; n=6; ... 36 1.4
UniRef50_Q8ID46 Cluster: Putative uncharacterized protein MAL13P... 36 1.4
UniRef50_Q8I4Y8 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q8I3T6 Cluster: Putative uncharacterized protein PFE086... 36 1.4
UniRef50_Q54YR3 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q54PH5 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q54E42 Cluster: Poly(ADP-ribosyl)transferase; n=2; Dict... 36 1.4
UniRef50_Q381C8 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q23CN5 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q16G64 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_A7RTY9 Cluster: Predicted protein; n=1; Nematostella ve... 36 1.4
UniRef50_Q6BP16 Cluster: Similar to CA5453|IPF256 Candida albica... 36 1.4
UniRef50_Q5A868 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q4P6M8 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q4P4B8 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q1DX41 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q08438 Cluster: Protein VHS3; n=2; Saccharomyces cerevi... 36 1.4
UniRef50_Q7T6X5 Cluster: DNA-directed RNA polymerase subunit 1; ... 36 1.4
UniRef50_Q50926 Cluster: Probable tetraheme cytochrome c-type pr... 36 1.4
UniRef50_UPI0000E494A3 Cluster: PREDICTED: similar to GON4L prot... 35 1.8
UniRef50_UPI0000DA45A5 Cluster: PREDICTED: hypothetical protein;... 35 1.8
UniRef50_UPI0000DA3A17 Cluster: PREDICTED: hypothetical protein;... 35 1.8
UniRef50_UPI00006CD032 Cluster: Micro-fibrillar-associated prote... 35 1.8
UniRef50_UPI00006CB66A Cluster: Protein kinase domain containing... 35 1.8
UniRef50_A7BNB4 Cluster: DNA-directed RNA polymerase beta chain;... 35 1.8
UniRef50_A0R152 Cluster: Ribonuclease, Rne/Rng family protein; n... 35 1.8
UniRef50_Q9LYP8 Cluster: Putative uncharacterized protein T28J14... 35 1.8
UniRef50_Q9FFP0 Cluster: Arabidopsis thaliana genomic DNA, chrom... 35 1.8
UniRef50_Q2WGI5 Cluster: RNA polymerase beta'' chain; n=1; Selag... 35 1.8
UniRef50_A4RQL4 Cluster: Predicted protein; n=2; Ostreococcus|Re... 35 1.8
UniRef50_A2XHH9 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_Q9VLK2 Cluster: CG13096-PA; n=2; Drosophila melanogaste... 35 1.8
UniRef50_Q9NF96 Cluster: Putative uncharacterized protein L8032.... 35 1.8
UniRef50_Q8IHW3 Cluster: Putative uncharacterized protein; n=3; ... 35 1.8
UniRef50_Q8IDI0 Cluster: Putative uncharacterized protein MAL13P... 35 1.8
UniRef50_Q8IB25 Cluster: Putative uncharacterized protein MAL8P1... 35 1.8
UniRef50_Q8I2S2 Cluster: Putative uncharacterized protein PFI115... 35 1.8
UniRef50_Q8I1Y6 Cluster: Putative uncharacterized protein PFD020... 35 1.8
UniRef50_Q7Q6I2 Cluster: ENSANGP00000004480; n=1; Anopheles gamb... 35 1.8
UniRef50_Q57Y61 Cluster: Protein kinase, putative; n=2; Trypanos... 35 1.8
UniRef50_Q554N1 Cluster: Poly(ADP-ribose) polymerase, catalytic ... 35 1.8
UniRef50_O62325 Cluster: Putative uncharacterized protein; n=2; ... 35 1.8
UniRef50_A7SD70 Cluster: Predicted protein; n=1; Nematostella ve... 35 1.8
UniRef50_A7RZK8 Cluster: Predicted protein; n=1; Nematostella ve... 35 1.8
UniRef50_A5K7G8 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_A5K321 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_A2RVF1 Cluster: IP16861p; n=1; Drosophila melanogaster|... 35 1.8
UniRef50_Q8WZV6 Cluster: Related to eukaryotic translation initi... 35 1.8
UniRef50_Q7S3K8 Cluster: Predicted protein; n=1; Neurospora cras... 35 1.8
UniRef50_Q6FTM9 Cluster: Similar to sp|P09620 Saccharomyces cere... 35 1.8
UniRef50_Q6CGV8 Cluster: Yarrowia lipolytica chromosome A of str... 35 1.8
UniRef50_Q6C696 Cluster: Similar to sp|P38772 Saccharomyces cere... 35 1.8
UniRef50_Q4PC91 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_Q4PA65 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_Q0V2M0 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_A6R5D1 Cluster: Predicted protein; n=1; Ajellomyces cap... 35 1.8
UniRef50_A5DJH7 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_A4RCY1 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_A1CR73 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_P14599 Cluster: Beta-amyloid-like protein precursor; n=... 35 1.8
UniRef50_UPI00015B57C8 Cluster: PREDICTED: similar to ribosomal ... 35 2.4
UniRef50_UPI0000F2E979 Cluster: PREDICTED: hypothetical protein;... 35 2.4
UniRef50_UPI0000F1DD49 Cluster: PREDICTED: hypothetical protein;... 35 2.4
UniRef50_UPI0000DD85E5 Cluster: PREDICTED: hypothetical protein;... 35 2.4
UniRef50_UPI0000D57623 Cluster: PREDICTED: hypothetical protein;... 35 2.4
UniRef50_UPI000023EBF2 Cluster: hypothetical protein FG01150.1; ... 35 2.4
UniRef50_UPI000023EAE5 Cluster: hypothetical protein FG08488.1; ... 35 2.4
UniRef50_UPI000023E987 Cluster: hypothetical protein FG04470.1; ... 35 2.4
UniRef50_UPI0000161E56 Cluster: hypothetical protein Esvgp165; n... 35 2.4
UniRef50_Q569P4 Cluster: Zgc:113229; n=3; Danio rerio|Rep: Zgc:1... 35 2.4
UniRef50_Q07G02 Cluster: Chromatin accessibility complex 1; n=3;... 35 2.4
UniRef50_A1A5Z7 Cluster: Zgc:158441; n=7; Deuterostomia|Rep: Zgc... 35 2.4
UniRef50_Q4KT76 Cluster: Hoar peptide; n=1; Chrysodeixis chalcit... 35 2.4
UniRef50_Q9P9Z8 Cluster: Type I restriction-modification system ... 35 2.4
UniRef50_Q0LEB8 Cluster: Trigger factor-like; n=1; Herpetosiphon... 35 2.4
UniRef50_A4T7C4 Cluster: Putative uncharacterized protein precur... 35 2.4
UniRef50_A4EIN3 Cluster: Putative uncharacterized protein; n=2; ... 35 2.4
UniRef50_A0Z5C8 Cluster: VCBS protein; n=8; cellular organisms|R... 35 2.4
UniRef50_Q0JID7 Cluster: Os01g0809000 protein; n=2; Oryza sativa... 35 2.4
UniRef50_Q0JH23 Cluster: Os01g0888700 protein; n=8; Eukaryota|Re... 35 2.4
UniRef50_A4S880 Cluster: Predicted protein; n=2; Ostreococcus|Re... 35 2.4
UniRef50_Q9GQ82 Cluster: Aspartyl beta-hydroxylase variant 1; n=... 35 2.4
UniRef50_Q964F8 Cluster: Merozoite surface protein 8; n=6; Plasm... 35 2.4
UniRef50_Q8ILQ3 Cluster: Putative uncharacterized protein; n=5; ... 35 2.4
UniRef50_Q8IEJ2 Cluster: Putative uncharacterized protein PF13_0... 35 2.4
UniRef50_Q8IBI6 Cluster: Putative uncharacterized protein MAL7P1... 35 2.4
UniRef50_Q8I239 Cluster: Phosphatidylinositol-4-phosphate 5-kina... 35 2.4
UniRef50_Q55CH6 Cluster: Putative uncharacterized protein; n=1; ... 35 2.4
UniRef50_Q551B2 Cluster: Putative uncharacterized protein; n=1; ... 35 2.4
UniRef50_Q54VF1 Cluster: Putative uncharacterized protein; n=1; ... 35 2.4
UniRef50_Q54U49 Cluster: Putative uncharacterized protein; n=2; ... 35 2.4
UniRef50_Q54NP8 Cluster: Kinesin 4; n=3; Dictyostelium discoideu... 35 2.4
UniRef50_O97242 Cluster: Putative uncharacterized protein MAL3P2... 35 2.4
UniRef50_Q874Y7 Cluster: Similar to Sgd1p; n=3; Sordariales|Rep:... 35 2.4
UniRef50_Q75A01 Cluster: ADR122Cp; n=1; Eremothecium gossypii|Re... 35 2.4
UniRef50_Q6BYD8 Cluster: DhTRK1 protein; n=2; Saccharomycetaceae... 35 2.4
UniRef50_Q4P9D7 Cluster: Putative uncharacterized protein; n=1; ... 35 2.4
UniRef50_Q4P791 Cluster: Putative uncharacterized protein; n=1; ... 35 2.4
UniRef50_Q0TXS8 Cluster: Putative uncharacterized protein; n=1; ... 35 2.4
UniRef50_A7TT01 Cluster: Putative uncharacterized protein; n=1; ... 35 2.4
UniRef50_A7F9N7 Cluster: Predicted protein; n=1; Sclerotinia scl... 35 2.4
UniRef50_A5E145 Cluster: Predicted protein; n=1; Lodderomyces el... 35 2.4
UniRef50_A5DKP2 Cluster: Putative uncharacterized protein; n=1; ... 35 2.4
UniRef50_P07222 Cluster: Nucleophosmin; n=7; Euteleostomi|Rep: N... 35 2.4
UniRef50_UPI0000E234D3 Cluster: PREDICTED: hypothetical protein;... 34 3.2
UniRef50_UPI0000DA3BB5 Cluster: PREDICTED: hypothetical protein;... 34 3.2
UniRef50_UPI00006CA661 Cluster: FHA domain containing protein; n... 34 3.2
UniRef50_UPI0000583DCA Cluster: PREDICTED: hypothetical protein;... 34 3.2
UniRef50_UPI000023D533 Cluster: hypothetical protein FG01105.1; ... 34 3.2
UniRef50_Q4SFM5 Cluster: Chromosome 7 SCAF14601, whole genome sh... 34 3.2
UniRef50_Q499A1 Cluster: Zgc:110391; n=4; Danio rerio|Rep: Zgc:1... 34 3.2
UniRef50_A6G8G9 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_A6FX83 Cluster: Nuclease (SNase-like) protein; n=1; Ple... 34 3.2
UniRef50_Q9LYT4 Cluster: Putative uncharacterized protein F17J16... 34 3.2
UniRef50_Q9LUT8 Cluster: Arabidopsis thaliana genomic DNA, chrom... 34 3.2
UniRef50_Q7XND1 Cluster: OSJNBb0034I13.8 protein; n=4; Oryza sat... 34 3.2
UniRef50_Q68Q09 Cluster: Putative uncharacterized protein RP2; n... 34 3.2
UniRef50_Q3EB50 Cluster: Uncharacterized protein At3g17340.1; n=... 34 3.2
UniRef50_Q2R109 Cluster: Expressed protein; n=2; Oryza sativa (j... 34 3.2
UniRef50_Q27GK2 Cluster: Uncharacterized protein At3g59020.2; n=... 34 3.2
UniRef50_A5AZJ9 Cluster: Putative uncharacterized protein; n=2; ... 34 3.2
UniRef50_Q19ZB0 Cluster: Gp57; n=2; unclassified Siphoviridae|Re... 34 3.2
UniRef50_Q8MYL8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_Q8IM35 Cluster: Putative uncharacterized protein; n=3; ... 34 3.2
UniRef50_Q8ILK5 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_Q8IKX1 Cluster: Putative uncharacterized protein; n=3; ... 34 3.2
UniRef50_Q8IJV9 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_Q8IJ89 Cluster: Putative uncharacterized protein; n=4; ... 34 3.2
UniRef50_Q8IHU4 Cluster: Putative uncharacterized protein; n=2; ... 34 3.2
UniRef50_Q8IDE1 Cluster: Putative uncharacterized protein PF13_0... 34 3.2
UniRef50_Q8IAN1 Cluster: Putative uncharacterized protein PF08_0... 34 3.2
UniRef50_Q8I2G8 Cluster: Vesicle transport protein, putative; n=... 34 3.2
UniRef50_Q8I2E0 Cluster: Putative uncharacterized protein PFA066... 34 3.2
UniRef50_Q54ZE3 Cluster: Putative uncharacterized protein; n=2; ... 34 3.2
UniRef50_Q54XM9 Cluster: Transcription initiation factor TFIID s... 34 3.2
UniRef50_Q4UDR9 Cluster: Hypothetical P-, Q-rich protein family ... 34 3.2
UniRef50_O96256 Cluster: Putative uncharacterized protein PFB082... 34 3.2
UniRef50_A7S5J0 Cluster: Predicted protein; n=1; Nematostella ve... 34 3.2
UniRef50_A5K9T3 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_A5K8Y9 Cluster: Putative uncharacterized protein; n=2; ... 34 3.2
UniRef50_A5K812 Cluster: Putative uncharacterized protein; n=2; ... 34 3.2
UniRef50_A2ELE1 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_A2DDG4 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_Q6CQZ0 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 34 3.2
UniRef50_Q4PI74 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_Q0U2E2 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_A5DZM1 Cluster: Protein SIS2; n=3; Saccharomycetales|Re... 34 3.2
UniRef50_A3LN38 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_A1YIC5 Cluster: DNA-directed RNA polymerase; n=1; Chytr... 34 3.2
UniRef50_A1D818 Cluster: DEAD/DEAH box helicase, putative; n=3; ... 34 3.2
UniRef50_Q4PIC4 Cluster: Transcription elongation factor SPT5; n... 34 3.2
UniRef50_Q5A6Q7 Cluster: Chromatin modification-related protein ... 34 3.2
UniRef50_Q08032 Cluster: Cell division control protein 45; n=5; ... 34 3.2
>UniRef50_UPI0000D56583 Cluster: PREDICTED: similar to CG10122-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG10122-PA - Tribolium castaneum
Length = 1619
Score = 134 bits (325), Expect = 2e-30
Identities = 65/113 (57%), Positives = 80/113 (70%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAGRG+MNVTLGIPRLREI KTP+M+IPFL V ++ +KAE LR+ L RV +
Sbjct: 1198 FHFAGRGEMNVTLGIPRLREILMMASKNIKTPSMEIPFLPVENLEEKAEDLRKMLTRVVV 1257
Query: 349 ADVLEKIDVQCEIVVXPERQLKTTMKFTFLPHKQYKTQYAVKPTQIIKHMQNK 507
ADVLEK+DV E+ V P RQ + T++F FLP K YK + V P I+KHM K
Sbjct: 1258 ADVLEKVDVTVELNVEPVRQHRYTLRFQFLPRKYYKNDFYVGPKYILKHMTRK 1310
Score = 67.3 bits (157), Expect = 4e-10
Identities = 33/53 (62%), Positives = 40/53 (75%), Gaps = 2/53 (3%)
Frame = +3
Query: 24 YESYTDK--KKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
Y+S K K+F ++ K + S+ +PGEPVGLLAAQSIGEPSTQMTLNTF F
Sbjct: 1148 YQSTNKKQTKQFQNMLKLKAMRSLCAPGEPVGLLAAQSIGEPSTQMTLNTFHF 1200
Score = 44.8 bits (101), Expect = 0.002
Identities = 26/73 (35%), Positives = 43/73 (58%)
Frame = +3
Query: 510 FDEMFTVVRKHAKATCGVMWASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEA 689
F EMFT +RK +K T ++ E+K+Q+A S++D+ E T+ A+ + DSSD+E
Sbjct: 1312 FGEMFTAIRKLSKVTSNLVMMDEEKRQKA----SNDDE-----EETNDADANEDSSDEEP 1362
Query: 690 PNEDDDNTAAKIR 728
+ +D T K +
Sbjct: 1363 EDTEDAKTGNKFK 1375
>UniRef50_Q16K29 Cluster: DNA-directed RNA polymerase; n=1; Aedes
aegypti|Rep: DNA-directed RNA polymerase - Aedes aegypti
(Yellowfever mosquito)
Length = 1686
Score = 117 bits (282), Expect = 3e-25
Identities = 59/113 (52%), Positives = 76/113 (67%), Gaps = 3/113 (2%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTK---KAEKLRQKLNR 339
FHFAGRG+MNVTLGIPRLREI KTP+M+IPF K AE++R+ LNR
Sbjct: 1204 FHFAGRGEMNVTLGIPRLREILMLASQRIKTPSMEIPFRAFKSHKKLNTAAERMRKTLNR 1263
Query: 340 VTIADVLEKIDVQCEIVVXPERQLKTTMKFTFLPHKQYKTQYAVKPTQIIKHM 498
VT+ADVL+ I V +V+ P R ++ T++FTFLP Y Y V+P QI+K+M
Sbjct: 1264 VTVADVLQDIHVNSRLVLRPSRGMQHTVRFTFLPQDAYAHDYRVEPKQILKYM 1316
Score = 72.5 bits (170), Expect = 1e-11
Identities = 80/251 (31%), Positives = 111/251 (44%), Gaps = 14/251 (5%)
Frame = +3
Query: 27 ESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPFCRSR*HERHP 206
+S T E+M K ++A+PGEPVGLLAAQSIGEPSTQMTLNTF F R
Sbjct: 1157 KSQTPLHDMDELMKVKNSYALAAPGEPVGLLAAQSIGEPSTQMTLNTFHFA-----GRGE 1211
Query: 207 RNTTSAGDP**LHQRN*NSQHGHT----FPKRVGRDKKSRETETEIEQSDYSGRSRKD*R 374
N T G P SQ T P R + K T E + + + D
Sbjct: 1212 MNVT-LGIPRLREILMLASQRIKTPSMEIPFRAFKSHKKLNTAAERMRKTLNRVTVADVL 1270
Query: 375 A---MRNRCEXRETTEDHHEIH--ILTPQTI*DAVRCEADANYKTHAK*IFDEMFTVVRK 539
+ +R R + H + L R E K + F MF ++ +
Sbjct: 1271 QDIHVNSRLVLRPSRGMQHTVRFTFLPQDAYAHDYRVEPKQILKYMSGSFFKYMFRIISR 1330
Query: 540 HAKATCGVMWASEQKKQRARAAKSDEDDGDDAPEP---TDTANNDLDSSDDEA-PNEDD- 704
AK+ V+ EQ+ + + ++ DD D+ P T +SSDDEA NED+
Sbjct: 1331 SAKSK-NVLIEIEQESKAKQTESTENDDLVDSRAPNVSTRLEEEPDESSDDEAGGNEDEA 1389
Query: 705 DNTAAKIRNKR 737
D T +K++NK+
Sbjct: 1390 DATESKLKNKQ 1400
>UniRef50_P91875 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=3; Sophophora|Rep: DNA-directed RNA polymerase I
subunit RPA1 - Drosophila melanogaster (Fruit fly)
Length = 1642
Score = 112 bits (270), Expect = 7e-24
Identities = 59/120 (49%), Positives = 75/120 (62%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAGRG+MNVTLGIPRLREI S KTP+MDIP +AEKLR LN VT+
Sbjct: 1198 FHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPGQQ--HQAEKLRINLNSVTL 1255
Query: 349 ADVLEKIDVQCEIVVXPERQLKTTMKFTFLPHKQYKTQYAVKPTQIIKHMQNKSSMKCLR 528
A++LE + V + + PER + M+F FLP + YK Y V+P IIK+M + +R
Sbjct: 1256 ANLLEYVHVSTGLTLDPERSYEYDMRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQLIR 1315
Score = 68.9 bits (161), Expect = 1e-10
Identities = 30/45 (66%), Positives = 38/45 (84%)
Frame = +3
Query: 42 KKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
K+ ++M K ++S+A+PGEPVGL+AAQSIGEPSTQMTLNTF F
Sbjct: 1156 KETIADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHF 1200
Score = 37.5 bits (83), Expect = 0.34
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +3
Query: 576 EQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDNTAAKIRNKR 737
+ KK + +D D+GD+ AN+D DSSDD N+DDD T K++ ++
Sbjct: 1333 DDKKDADKDDDNDLDNGDEVGRSKAKANDD-DSSDD---NDDDDATGVKLKQRK 1382
>UniRef50_UPI00015B5184 Cluster: PREDICTED: similar to DNA-directed
RNA polymerase I largest subunit; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to DNA-directed RNA
polymerase I largest subunit - Nasonia vitripennis
Length = 1694
Score = 111 bits (266), Expect = 2e-23
Identities = 54/108 (50%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFL-NVSDVTKKAEKLRQKLNRVT 345
FHFAGRG+MNVTLGIPRLREI KTP+M+IPF ++ ++TK+A K+R KL +
Sbjct: 1222 FHFAGRGEMNVTLGIPRLREILMMASKNIKTPSMEIPFKKDLPNLTKQANKVRLKLTKCY 1281
Query: 346 IADVLEKIDVQCEIVVXPERQLKTTMKFTFLPHKQYKTQYAVKPTQII 489
IA+VL+ I V+ ++V P+RQ++ T+ +LPH+ YK ++ V P II
Sbjct: 1282 IANVLKHIKVERKLVHQPQRQMQYTITVEYLPHRYYKNEFGVHPKDII 1329
Score = 67.7 bits (158), Expect = 3e-10
Identities = 35/58 (60%), Positives = 42/58 (72%)
Frame = +3
Query: 3 KNRSNSLYESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
K +S S S K++ EV+ AK + ++ PGEPVGLLAAQSIGEPSTQMTLNTF F
Sbjct: 1168 KKKSGSFTTSI-GKEELREVLCAKVMNTLCPPGEPVGLLAAQSIGEPSTQMTLNTFHF 1224
Score = 46.0 bits (104), Expect = 0.001
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Frame = +3
Query: 510 FDEMFTVVRKHAKATCGVMWASEQKKQ-RARAAKSDEDDGDDAPEPTDTANNDL----DS 674
F E+F ++K AK+T +++ +E+K+Q + +K DEDD EP DL +S
Sbjct: 1337 FREIFRDIKKAAKSTGSIVYFNEEKRQTKNEDSKLDEDDAGAEDEPKSRGRFDLGEMHES 1396
Query: 675 SDDEAPNEDDDNTAAK 722
SD+E +D D T A+
Sbjct: 1397 SDEEEVADDADATTAR 1412
>UniRef50_UPI0000DB7146 Cluster: PREDICTED: similar to RNA polymerase
I subunit CG10122-PA; n=1; Apis mellifera|Rep: PREDICTED:
similar to RNA polymerase I subunit CG10122-PA - Apis
mellifera
Length = 1665
Score = 107 bits (257), Expect = 3e-22
Identities = 52/109 (47%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPF-LNVSDVTKKAEKLRQKLNRVT 345
FHFAGRG+MNVTLGIPRLREI KTP+M+IPF ++ +V K++ KL+ KL +
Sbjct: 1181 FHFAGRGEMNVTLGIPRLREILMMASKNIKTPSMEIPFRKDLKNVIKRSNKLKLKLTKCI 1240
Query: 346 IADVLEKIDVQCEIVVXPERQLKTTMKFTFLPHKQYKTQYAVKPTQIIK 492
+++VL+ I V ++ P+RQL T+ +LPHK YK ++ V+P +I+K
Sbjct: 1241 LSNVLDNIIVNRKMEQWPKRQLIYTITINYLPHKSYKGEFCVQPHEILK 1289
Score = 63.3 bits (147), Expect = 6e-09
Identities = 29/45 (64%), Positives = 36/45 (80%)
Frame = +3
Query: 42 KKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
KK ++++ K ++ + PGEPVGLLAAQSIGEPSTQMTLNTF F
Sbjct: 1139 KKDLRDLLSMKVMKVVCPPGEPVGLLAAQSIGEPSTQMTLNTFHF 1183
>UniRef50_O95602 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=39; Euteleostomi|Rep: DNA-directed RNA polymerase I
subunit RPA1 - Homo sapiens (Human)
Length = 1717
Score = 103 bits (248), Expect = 3e-21
Identities = 52/116 (44%), Positives = 74/116 (63%), Gaps = 3/116 (2%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAGRG+MNVTLGIPRLREI + KTP M +P LN K+ + L+++L RV +
Sbjct: 1232 FHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCL 1291
Query: 349 ADVLEKIDVQCEIVVXPERQLK---TTMKFTFLPHKQYKTQYAVKPTQIIKHMQNK 507
+VL+KIDVQ E E+Q K ++F FLPH Y+ + ++P I++ M+ +
Sbjct: 1292 GEVLQKIDVQ-ESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETR 1346
Score = 58.4 bits (135), Expect = 2e-07
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = +3
Query: 60 VMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
++ K+ S+ PGE VGLLAAQSIGEPSTQMTLNTF F
Sbjct: 1196 LLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHF 1234
>UniRef50_UPI0000ECC670 Cluster: DNA-directed RNA polymerase I
largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
subunit) (RPA194).; n=5; Gallus gallus|Rep: DNA-directed
RNA polymerase I largest subunit (EC 2.7.7.6) (RNA
polymerase I 194 kDa subunit) (RPA194). - Gallus gallus
Length = 917
Score = 98.7 bits (235), Expect = 1e-19
Identities = 47/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAGRG+MNVTLGIPRLREI + KTP M +P L KK ++L+++L RV +
Sbjct: 435 FHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLGTKKAHKKVKQLKKQLTRVCL 494
Query: 349 ADVLEKIDVQCEIVVXPERQLKT--TMKFTFLPHKQYKTQYAVKPTQIIKHMQNK 507
A+VL+K++++ + + + +KF FLP++ Y+ + VKP I++ M+ +
Sbjct: 495 AEVLQKVELEESLHLKNKENSHRLYKIKFCFLPYEYYREEKCVKPRDILRFMETR 549
Score = 58.4 bits (135), Expect = 2e-07
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +3
Query: 57 EVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+++ K+ S+ PGE VGLLAAQSIGEPSTQMTLNTF F
Sbjct: 398 DLLYLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHF 437
>UniRef50_A7S9W9 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1242
Score = 97.5 bits (232), Expect = 3e-19
Identities = 52/114 (45%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAGRG+MNVTLGIPR+REI + KTP MD+P L V K+A+KL+QKLNRV +
Sbjct: 781 FHFAGRGEMNVTLGIPRMREILMTASANIKTPTMDMPLLAGKKVIKRAKKLQQKLNRVML 840
Query: 349 ADVLEKIDVQCEIVVXPE---RQLKTTMKFTFLPHKQYKTQYAVKPTQIIKHMQ 501
+ VL IDV E + E R +K FLP Y+ ++ P +I+ +++
Sbjct: 841 SQVLRSIDV-WESLSPKESGTRMRSYRIKMKFLPKSVYEDEFYCSPAKILHYVE 893
Score = 63.3 bits (147), Expect = 6e-09
Identities = 31/43 (72%), Positives = 33/43 (76%)
Frame = +3
Query: 48 KFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
KF +M K L S+ PGE VGLLAAQSIGEPSTQMTLNTF F
Sbjct: 741 KFRSLMYLKTLRSLVDPGEAVGLLAAQSIGEPSTQMTLNTFHF 783
>UniRef50_UPI0000E46841 Cluster: PREDICTED: similar to RNA polymerase
I large subunit; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to RNA polymerase I large subunit -
Strongylocentrotus purpuratus
Length = 1742
Score = 94.7 bits (225), Expect = 2e-18
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAGRGDMNVTLGIPRLREI + KTP+M IPFLN KK ++ ++L+RV +
Sbjct: 1232 FHFAGRGDMNVTLGIPRLREILMVASANIKTPSMTIPFLNPDISAKKIGRICRQLSRVHL 1291
Query: 349 ADVLEKIDV--QCEIVVXPERQLKTTMKFTFLPHKQYKTQYAVKPTQIIKHMQ 501
+ V+E ID+ + + ++ FLPH++YK + P I+ +++
Sbjct: 1292 SQVIEDIDIWESYDFPTTHDHYRVYKIRLNFLPHEEYKDELNATPASILSYIE 1344
Score = 61.3 bits (142), Expect = 2e-08
Identities = 28/46 (60%), Positives = 35/46 (76%)
Frame = +3
Query: 39 DKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
++ K +M +K+ ++ PGE VGLLAAQSIGEPSTQMTLNTF F
Sbjct: 1189 EETKLKNMMYSKYQRALCDPGEAVGLLAAQSIGEPSTQMTLNTFHF 1234
>UniRef50_UPI0000F1FC15 Cluster: PREDICTED: similar to polymerase
(RNA) I polypeptide A, 194kDa; n=1; Danio rerio|Rep:
PREDICTED: similar to polymerase (RNA) I polypeptide A,
194kDa - Danio rerio
Length = 1221
Score = 89.0 bits (211), Expect = 1e-16
Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAGRG+MNVTLGIPRLREI S KTP M IP + K+ + LR+K+ RV +
Sbjct: 752 FHFAGRGEMNVTLGIPRLREILLVASSNIKTPMMSIPVVMNKKALKQVKTLRKKITRVCL 811
Query: 349 ADVLEKIDVQCEIVVXPERQLKT---TMKFTFLPHKQYKTQYAVKPTQIIKHMQ 501
++VL K++V + + LK+ + F FLP ++Y+ + P +I+ +M+
Sbjct: 812 SEVLHKVNVIESFRMPKKETLKSRVFKITFHFLPPERYQQDKLLNPDEILHYME 865
Score = 59.3 bits (137), Expect = 1e-07
Identities = 27/47 (57%), Positives = 34/47 (72%)
Frame = +3
Query: 36 TDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
TD + ++ K+ ++ PGE VGL+AAQSIGEPSTQMTLNTF F
Sbjct: 708 TDADRLRNLLQLKWQRALCDPGEAVGLVAAQSIGEPSTQMTLNTFHF 754
>UniRef50_A1CP71 Cluster: DNA-directed RNA polymerase; n=8;
Eurotiomycetidae|Rep: DNA-directed RNA polymerase -
Aspergillus clavatus
Length = 1734
Score = 71.7 bits (168), Expect = 2e-11
Identities = 39/120 (32%), Positives = 64/120 (53%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH AG NVTLGIPRLREI + TP M + LN + +E+ + +++++I
Sbjct: 1269 FHLAGHSAKNVTLGIPRLREIVMTASAHIMTPTMTL-ILNEELSKEDSERFAKAISKLSI 1327
Query: 349 ADVLEKIDVQCEIVVXPERQLKTTMKFTFLPHKQYKTQYAVKPTQIIKHMQNKSSMKCLR 528
A+V++K+ V+ I R + TF P ++Y +YA+ + +QNK K ++
Sbjct: 1328 AEVVDKVQVKERISSTGSRSKVYDIDITFFPVEEYTKEYAITTKDVQSTLQNKFIPKLVK 1387
Score = 64.5 bits (150), Expect = 3e-09
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +3
Query: 42 KKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
KK F +MN K+L+S+ PGE VG++A QSIGEPSTQMTLNTF
Sbjct: 1227 KKAFNTLMNMKYLKSVVDPGEAVGIVAGQSIGEPSTQMTLNTF 1269
>UniRef50_Q5KIF6 Cluster: DNA-directed RNA polymerase; n=1;
Filobasidiella neoformans|Rep: DNA-directed RNA
polymerase - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 1727
Score = 70.1 bits (164), Expect = 5e-11
Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFL-NVSDVTKKAEKLRQKLNRVT 345
FH AG G NVTLGIPRLREI S+ TP M +P ++SD K E ++++R+T
Sbjct: 1267 FHLAGHGAANVTLGIPRLREIVMTASSKPTTPTMKLPLREHISD--KDIETFVKQVSRLT 1324
Query: 346 IADVLEKIDV----QCEIVVXPERQLKTTMKFTFLPHKQYKTQYAVKPTQI 486
+++V+E++ V + RQ K T+ F P ++Y T+Y + Q+
Sbjct: 1325 LSEVVERVTVTERLSSKSSESDSRQRKYTVLLEFYPPEEYGTEYEITSEQL 1375
Score = 60.5 bits (140), Expect = 4e-08
Identities = 25/43 (58%), Positives = 35/43 (81%)
Frame = +3
Query: 42 KKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+K+F+ + A+++ S+ PGE VGLLA+Q +GEPSTQMTLNTF
Sbjct: 1225 EKEFLGLARARYMRSLVEPGEAVGLLASQGVGEPSTQMTLNTF 1267
>UniRef50_A7PWB4 Cluster: Chromosome chr8 scaffold_34, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr8 scaffold_34, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1518
Score = 69.3 bits (162), Expect = 9e-11
Identities = 29/49 (59%), Positives = 40/49 (81%)
Frame = +3
Query: 24 YESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+++ +K FV ++ K++ S+A PGEPVG+LAAQS+GEPSTQMTLNTF
Sbjct: 1041 FDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTF 1089
Score = 68.1 bits (159), Expect = 2e-10
Identities = 34/69 (49%), Positives = 46/69 (66%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH AGRG++NVTLGIPRL+EI ++ KTP M P L + AE+L KL +VT+
Sbjct: 1089 FHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCP-LQMGRSKDDAERLAAKLKKVTV 1147
Query: 349 ADVLEKIDV 375
AD+ E ++V
Sbjct: 1148 ADITESMEV 1156
>UniRef50_A5BD07 Cluster: DNA-directed RNA polymerase; n=1; Vitis
vinifera|Rep: DNA-directed RNA polymerase - Vitis
vinifera (Grape)
Length = 1350
Score = 69.3 bits (162), Expect = 9e-11
Identities = 29/49 (59%), Positives = 40/49 (81%)
Frame = +3
Query: 24 YESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+++ +K FV ++ K++ S+A PGEPVG+LAAQS+GEPSTQMTLNTF
Sbjct: 1259 FDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTF 1307
Score = 49.2 bits (112), Expect = 1e-04
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIP 279
FH AGRG++NVTLGIPRL+EI ++ KTP M P
Sbjct: 1307 FHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCP 1343
>UniRef50_A6R8S3 Cluster: DNA-directed RNA polymerase; n=1;
Ajellomyces capsulatus NAm1|Rep: DNA-directed RNA
polymerase - Ajellomyces capsulatus NAm1
Length = 1573
Score = 66.5 bits (155), Expect = 6e-10
Identities = 30/48 (62%), Positives = 35/48 (72%)
Frame = +3
Query: 27 ESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
E KK F VMN K++ S+ PGE VG++A QSIGEPSTQMTLNTF
Sbjct: 1053 EKGISKKDFARVMNLKYMRSVVEPGESVGIVAGQSIGEPSTQMTLNTF 1100
Score = 58.8 bits (136), Expect = 1e-07
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH AG NVTLGIPRLREI ++ TP M L K + ++++TI
Sbjct: 1100 FHLAGHSAKNVTLGIPRLREIVMTASNQILTPTM-TGVLRKELTEKDGRIFAKAISKLTI 1158
Query: 349 ADVLEKIDVQCEIVVXPERQLKT--TMKFTFLPHKQYKTQYAVKPTQIIKHMQNK 507
A+V++ + V + + ++ F P ++Y +YA++ I+K +Q+K
Sbjct: 1159 AEVVDTLRVHERVSSGSSHGMAKIYDLEIDFFPPEEYTEEYAIQIEDILKTLQHK 1213
>UniRef50_Q9SVY0 Cluster: DNA-directed RNA polymerase I 190K
chain-like protein; n=1; Arabidopsis thaliana|Rep:
DNA-directed RNA polymerase I 190K chain-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1670
Score = 65.3 bits (152), Expect = 1e-09
Identities = 27/46 (58%), Positives = 39/46 (84%)
Frame = +3
Query: 33 YTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ +++ ++++ +KF S+A PGEPVG+LAAQS+GEPSTQMTLNTF
Sbjct: 1133 FVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTF 1178
Score = 64.9 bits (151), Expect = 2e-09
Identities = 37/106 (34%), Positives = 57/106 (53%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH AGRG+MNVTLGIPRL+EI + KTP M P L + A + +L ++T+
Sbjct: 1178 FHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLK-GKTKEDANDITDRLRKITV 1236
Query: 349 ADVLEKIDVQCEIVVXPERQLKTTMKFTFLPHKQYKTQYAVKPTQI 486
AD+++ +++ E ++ + K L YK ++ K T I
Sbjct: 1237 ADIIKSMELSVVPYTVYENEVCSIHK---LKINLYKPEHYPKHTDI 1279
>UniRef50_P10964 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=11; Saccharomycetales|Rep: DNA-directed RNA polymerase
I subunit RPA1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1664
Score = 65.3 bits (152), Expect = 1e-09
Identities = 29/59 (49%), Positives = 46/59 (77%), Gaps = 2/59 (3%)
Frame = +3
Query: 6 NRSNSLYESY--TDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
++++ L++S ++KKF +M K++ S+ +PGE VG++A+QS+GEPSTQMTLNTF F
Sbjct: 1149 DKNSKLFKSSDGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHF 1207
Score = 61.7 bits (143), Expect = 2e-08
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLN-VSDVTKKAEKLRQKLNRVT 345
FHFAG G NVTLGIPRLREI + KTP M +P N VSD ++A+ + +++V
Sbjct: 1205 FHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVSD--EQADTFCKSISKVL 1262
Query: 346 IADVLEKIDV 375
+++V++K+ V
Sbjct: 1263 LSEVIDKVIV 1272
>UniRef50_P15398 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=2; Fungi/Metazoa group|Rep: DNA-directed RNA polymerase
I subunit RPA1 - Schizosaccharomyces pombe (Fission
yeast)
Length = 1689
Score = 64.9 bits (151), Expect = 2e-09
Identities = 29/56 (51%), Positives = 41/56 (73%)
Frame = +3
Query: 9 RSNSLYESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+ + L +S ++ KF +M ++ +S+ PGE VG+LA+QSIGEPSTQMTLNTF F
Sbjct: 1161 KESKLDDSLLNESKFKALMQLRYQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHF 1216
Score = 58.8 bits (136), Expect = 1e-07
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG G NVTLGIPRLREI + +TP M + LN K+A +++N++ +
Sbjct: 1214 FHFAGFGAKNVTLGIPRLREIIMTASANIQTPTMTLR-LNDGVSDKRASAFCKEVNKLVL 1272
Query: 349 ADVLEKIDVQCEIV-VXPERQLKT-TMKFTFLPHKQYKTQYAVKPTQIIKHMQNK 507
++V+ ++ V +I + Q KT ++ +Y+ +Y V +I N+
Sbjct: 1273 SEVVRQVRVTEKISGQGSDEQSKTYAIRLDLYSRDEYQDEYGVLQEEIESTFSNR 1327
>UniRef50_Q00WA2 Cluster: DNA-directed RNA polymerase; n=2;
Ostreococcus|Rep: DNA-directed RNA polymerase -
Ostreococcus tauri
Length = 1789
Score = 64.1 bits (149), Expect = 3e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +3
Query: 3 KNRSNSLYESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
KN S + T ++F +MN FL ++A PGE VG++AAQS+GEPSTQMTLNTF F
Sbjct: 1250 KNASLAAKSGVT-AEEFATLMNMMFLSNVAPPGEAVGVVAAQSVGEPSTQMTLNTFHF 1306
Score = 61.7 bits (143), Expect = 2e-08
Identities = 31/70 (44%), Positives = 44/70 (62%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAGRG+ NVTLGIPRLRE+ + TP M +P + A L ++L RV +
Sbjct: 1304 FHFAGRGEANVTLGIPRLRELLMAASRKLLTPVMVLPLRKGYRSKEHANTLCRRLRRVVL 1363
Query: 349 ADVLEKIDVQ 378
A+++EK+ V+
Sbjct: 1364 AELMEKLSVK 1373
>UniRef50_Q5TMU2 Cluster: DNA-directed RNA polymerase; n=1;
Anopheles gambiae str. PEST|Rep: DNA-directed RNA
polymerase - Anopheles gambiae str. PEST
Length = 785
Score = 64.1 bits (149), Expect = 3e-09
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = +3
Query: 57 EVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
E+M K S+A+PGEPVG+LAAQSIGEPSTQMTLNTF F
Sbjct: 710 ELMQVKGSASLAAPGEPVGVLAAQSIGEPSTQMTLNTFHF 749
Score = 64.1 bits (149), Expect = 3e-09
Identities = 29/39 (74%), Positives = 33/39 (84%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFL 285
FHFAGRG+MNVTLGIPRLREI +E KTP+M+IPFL
Sbjct: 747 FHFAGRGEMNVTLGIPRLREILMCAAAEIKTPSMEIPFL 785
>UniRef50_Q6C1S4 Cluster: DNA-directed RNA polymerase; n=1; Yarrowia
lipolytica|Rep: DNA-directed RNA polymerase - Yarrowia
lipolytica (Candida lipolytica)
Length = 1628
Score = 64.1 bits (149), Expect = 3e-09
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Frame = +3
Query: 3 KNRSNSLY-ESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
K+ S Y + +KKF +M K+++S +PGE +G++A+QSIGEPSTQMTLNTF F
Sbjct: 1119 KSGKKSTYADQGVTEKKFRSLMQLKYMQSTVNPGEALGIIASQSIGEPSTQMTLNTFHF 1177
Score = 63.3 bits (147), Expect = 6e-09
Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFL-NVSDVTKKAEKLRQKLNRVT 345
FHFAG G NVTLGIPR+REI TP M +P L +VSD +AE + + RV
Sbjct: 1175 FHFAGHGAANVTLGIPRMREIIMTASKSIMTPQMSLPVLPDVSDA--EAETFCRSVQRVV 1232
Query: 346 IADVLEKIDVQCEIVVXPERQ---LKTTMKFTFLPHKQYKTQYAVKPTQIIKHM 498
+++ ++ I+V + Q +K F K+Y+ +Y V P + K +
Sbjct: 1233 LSEFVDYIEVTEKTRAETMTQGAARSFDVKMQFYTAKEYEEEYDVSPDMLKKRI 1286
>UniRef50_UPI00004998AA Cluster: DNA-directed RNA polymerase I largest
subunit; n=4; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase I largest subunit - Entamoeba
histolytica HM-1:IMSS
Length = 1522
Score = 63.7 bits (148), Expect = 5e-09
Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH AGRGD+NVTLG+PR++E+ E TP+M I +L + K EKL + L +VT+
Sbjct: 1104 FHLAGRGDVNVTLGMPRIKELVMFAKKEIATPSM-ILYLKEPN-QKNTEKLAKLLTKVTL 1161
Query: 349 ADVLEKIDVQCEIVVXP-ERQLKTTMKFTFLPHKQYKTQYAVKPTQIIKHMQN 504
A+++E I I+V +R+ + T+ T + +Y+ T+I K +++
Sbjct: 1162 ANIIEGIKCLDSIIVHEGQRRRQYTIDLTLI--DKYEEVVDFNTTEITKKIKS 1212
Score = 61.3 bits (142), Expect = 2e-08
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = +3
Query: 39 DKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
D + F +M K+ +S+ +PGEPVG+LA QSIGEPSTQMTLNTF
Sbjct: 1061 DPETFKVMMMLKYNKSLINPGEPVGVLAGQSIGEPSTQMTLNTF 1104
>UniRef50_A0DJB3 Cluster: DNA-directed RNA polymerase; n=2;
Oligohymenophorea|Rep: DNA-directed RNA polymerase -
Paramecium tetraurelia
Length = 1696
Score = 62.1 bits (144), Expect = 1e-08
Identities = 28/52 (53%), Positives = 36/52 (69%)
Frame = +3
Query: 15 NSLYESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
N L + K+F + N ++L ++ PGE VG +AAQSIGEPSTQMTLNTF
Sbjct: 1203 NELQQKKISNKQFKSLANIRYLRALMHPGEAVGCVAAQSIGEPSTQMTLNTF 1254
Score = 62.1 bits (144), Expect = 1e-08
Identities = 27/70 (38%), Positives = 44/70 (62%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH AG G+ NVTLGIPRLREI + KTP M + FLN + +A++ ++++++
Sbjct: 1254 FHLAGHGEKNVTLGIPRLREILMTATKKQKTPTMSLQFLNANIEKSQADRYAKRMSKLVF 1313
Query: 349 ADVLEKIDVQ 378
+++ I V+
Sbjct: 1314 LELVNNIKVR 1323
>UniRef50_Q69X40 Cluster: DNA-directed RNA polymerase; n=6; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
subsp. japonica (Rice)
Length = 1748
Score = 61.3 bits (142), Expect = 2e-08
Identities = 27/56 (48%), Positives = 40/56 (71%)
Frame = +3
Query: 3 KNRSNSLYESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
K++ N +K+ ++++ K++ S+ PGE VG++AAQSIGEPSTQMTLNTF
Sbjct: 1171 KSKRNEKGRYDIKEKELMKLLKVKYISSLVDPGEAVGVVAAQSIGEPSTQMTLNTF 1226
Score = 52.8 bits (121), Expect = 8e-06
Identities = 27/64 (42%), Positives = 36/64 (56%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH AGRG+MNVTLGIPRL+E+ ++ TP M P L E++ KL +
Sbjct: 1226 FHLAGRGEMNVTLGIPRLKELLMTASAKISTPFMKCPLLEDKTWDDDEEEMDDKLKKARD 1285
Query: 349 ADVL 360
A+ L
Sbjct: 1286 AERL 1289
>UniRef50_Q553A1 Cluster: DNA-directed RNA polymerase; n=2;
Dictyostelium discoideum|Rep: DNA-directed RNA polymerase
- Dictyostelium discoideum AX4
Length = 1615
Score = 60.5 bits (140), Expect = 4e-08
Identities = 30/54 (55%), Positives = 37/54 (68%)
Frame = +3
Query: 9 RSNSLYESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
++ S + ++K F +M + SM SPGE VGLL AQSIGEPSTQMTLNTF
Sbjct: 1107 KTTSNRDGKINEKDFRNLMYLYYSRSMVSPGESVGLLCAQSIGEPSTQMTLNTF 1160
Score = 55.6 bits (128), Expect = 1e-06
Identities = 29/70 (41%), Positives = 44/70 (62%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH AGRG+ NVTLGIPRLRE+ ++ TP M+ +N S + EK+ + L + +
Sbjct: 1160 FHLAGRGEANVTLGIPRLRELIMTATTKPITPLMEFQ-INDSTNKVETEKMAKYLEILKL 1218
Query: 349 ADVLEKIDVQ 378
+D+++ I VQ
Sbjct: 1219 SDIIKDITVQ 1228
>UniRef50_A4RCX8 Cluster: DNA-directed RNA polymerase; n=3;
Sordariomycetes|Rep: DNA-directed RNA polymerase -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 1719
Score = 60.1 bits (139), Expect = 6e-08
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = +3
Query: 39 DKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
++K +V++AK++ S+ PGE VG++A QS+GEPSTQMTLNTF
Sbjct: 1192 NRKAAEKVLSAKYMRSLVHPGEAVGIVAGQSVGEPSTQMTLNTF 1235
Score = 56.4 bits (130), Expect = 7e-07
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH AG NVTLGIPRLRE+ S+ TP+M + LN EK + ++ + +
Sbjct: 1235 FHLAGHSAKNVTLGIPRLRELLMTASSKISTPSMTL-ILNEEMSPADGEKFAKAISMLPL 1293
Query: 349 ADVLEKIDVQCEIVVXPERQLKT--TMKFTFLPHKQYKTQYAVKPTQIIKHMQNK 507
+ V++K V + +L ++ F P +Y YA+ + ++ ++ K
Sbjct: 1294 SHVVDKATVFERVGTSINHKLAKMFDVRLRFFPSAEYTKTYAITTSDVLNTVETK 1348
>UniRef50_Q23DD6 Cluster: DNA-directed RNA polymerase; n=1;
Tetrahymena thermophila SB210|Rep: DNA-directed RNA
polymerase - Tetrahymena thermophila SB210
Length = 1727
Score = 59.7 bits (138), Expect = 7e-08
Identities = 27/42 (64%), Positives = 33/42 (78%)
Frame = +3
Query: 45 KKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+KF + N K+L S+ PG+ VG LAAQ+IGEPSTQMTLNTF
Sbjct: 1246 QKFHMLFNVKYLNSLIHPGDSVGCLAAQAIGEPSTQMTLNTF 1287
Score = 52.0 bits (119), Expect = 1e-05
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLN--VSDVTKKAEKLRQKLNRV 342
FH AG G +N+TLGIPRLREI + KTP M + N V+ ++ + +KL ++
Sbjct: 1287 FHLAGHGGVNLTLGIPRLREILMTATDKLKTPVMLLNLSNPEVAQNKEQVQNHARKLQKI 1346
Query: 343 TIADVLEKIDVQCEIVVXPERQL 411
+ +++ I+V+ + ++ + +
Sbjct: 1347 NLLELVNNIEVKEQKIIVVDNNI 1369
>UniRef50_A6SJ73 Cluster: DNA-directed RNA polymerase; n=2;
Sclerotiniaceae|Rep: DNA-directed RNA polymerase -
Botryotinia fuckeliana B05.10
Length = 1774
Score = 59.3 bits (137), Expect = 1e-07
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +3
Query: 42 KKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+K V+ AK+L+S+ PGE VG++A QS+GEPSTQMTLNTF
Sbjct: 1172 RKALEPVLVAKYLKSVVEPGEAVGIVAGQSVGEPSTQMTLNTF 1214
Score = 55.2 bits (127), Expect = 2e-06
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH AG NVTLGIPRLREI + TP+M + LN + EK + ++ +++
Sbjct: 1214 FHLAGHSSKNVTLGIPRLREIVMTASNHISTPSMTLT-LNEELTPDECEKFAKSISILSL 1272
Query: 349 ADVLEKIDVQCEI--VVXPERQLKTTMKFTFLPHKQYKTQYAVKPTQIIKHMQNKSSMK 519
A+VL+ V+ I V ++ + P K+Y YA+ ++ +Q + + K
Sbjct: 1273 AEVLDWATVKERIGRGVAFQQAKIYDIHIKLFPSKEYCETYAIDIDDVLFTLQRRFTSK 1331
>UniRef50_O17628 Cluster: DNA-directed RNA polymerase; n=3;
Caenorhabditis|Rep: DNA-directed RNA polymerase -
Caenorhabditis elegans
Length = 1737
Score = 58.8 bits (136), Expect = 1e-07
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = +3
Query: 72 KFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
K + S+A PGE VGLLAAQSIGEPSTQMTLNTF F
Sbjct: 1223 KGMRSLADPGENVGLLAAQSIGEPSTQMTLNTFHF 1257
Score = 56.4 bits (130), Expect = 7e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAGRG+MNVTLGIPRLREI TP+ I + + + ++++L+RV +
Sbjct: 1255 FHFAGRGEMNVTLGIPRLREILMTASKSIATPSASIAVI-AGTSRDRIDSIKRELDRVYL 1313
Query: 349 ADVLEKIDVQCEIVV 393
+L+ ++ +I +
Sbjct: 1314 KQLLKNFSLEEKITL 1328
>UniRef50_Q7RWI3 Cluster: DNA-directed RNA polymerase; n=4;
Pezizomycotina|Rep: DNA-directed RNA polymerase -
Neurospora crassa
Length = 1674
Score = 58.8 bits (136), Expect = 1e-07
Identities = 24/43 (55%), Positives = 34/43 (79%)
Frame = +3
Query: 42 KKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+K +++ AK++ S+ PGE VG++A QS+GEPSTQMTLNTF
Sbjct: 1163 RKNAEKILAAKYIRSLVEPGEAVGIVAGQSVGEPSTQMTLNTF 1205
Score = 55.2 bits (127), Expect = 2e-06
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDI-PFLNVSDVTKKAEKLRQKLNRVT 345
FH AG NVTLGIPRLREI S+ TP M + P +SD E+ + ++ +
Sbjct: 1205 FHLAGHSAKNVTLGIPRLREILMTASSKISTPAMTLYPNAELSDT--DCERFAKSISILP 1262
Query: 346 IADVLEKIDVQCEI---VVXPERQLKTTMKFTFLPHKQYKTQYAVKPTQIIKHMQNK 507
+ADV +++ V+ ++ + P +L ++ F P ++Y YA++ ++ ++ K
Sbjct: 1263 LADVTKEVTVREKMGRGLGYPLAKL-FEIRLRFFPSEEYCKTYAIEIADVLATVERK 1318
>UniRef50_P04050 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=225; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1733
Score = 58.8 bits (136), Expect = 1e-07
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = +3
Query: 63 MNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+ A+FL S+ PGE VG+LAAQSIGEP+TQMTLNTF F
Sbjct: 1049 IEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHF 1086
Score = 38.3 bits (85), Expect = 0.19
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG VT G+PRL+EI N KTP++ + +L A++ + KL R I
Sbjct: 1084 FHFAGVASKKVTSGVPRLKEILN-VAKNMKTPSLTV-YLEPGHA---ADQEQAKLIRSAI 1138
Query: 349 A-DVLEKIDVQCEIVVXPE 402
L+ + + EI P+
Sbjct: 1139 EHTTLKSVTIASEIYYDPD 1157
>UniRef50_A3FQH3 Cluster: DNA-directed RNA polymerase; n=2;
Cryptosporidium|Rep: DNA-directed RNA polymerase -
Cryptosporidium parvum Iowa II
Length = 1805
Score = 58.4 bits (135), Expect = 2e-07
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +3
Query: 27 ESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
E Y +++ K++++ SPGE VG LAAQSIGEP+TQMTLNTF
Sbjct: 1554 EEYESMLNMEKLLRLKYMKTQISPGEAVGCLAAQSIGEPATQMTLNTF 1601
Score = 45.2 bits (102), Expect = 0.002
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 18/104 (17%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFL------------------NVS 294
FH AG G NVTLGIPRL+E+ ++KTP + IP L +
Sbjct: 1601 FHLAGHGAANVTLGIPRLKELLQTG-GDSKTPYIFIPLLKDINSKKDKSSKFADEENDNK 1659
Query: 295 DVTKKAEKLRQKLNRVTIADVLEKIDVQCEIVVXPERQLKTTMK 426
D AEK+ + ++D++E + V+ IV + + K++ K
Sbjct: 1660 DFINYAEKVLDCFKSIPLSDIIENVGVESSIVYDEDGKFKSSHK 1703
>UniRef50_A2GJD3 Cluster: DNA-directed RNA polymerase; n=3;
Trichomonas vaginalis G3|Rep: DNA-directed RNA
polymerase - Trichomonas vaginalis G3
Length = 1004
Score = 58.4 bits (135), Expect = 2e-07
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVS-DVTKKAEKLRQKLNRVT 345
FH AG G NVTLGIPRLREI I T+TP + FL++S D KK ++ + R+
Sbjct: 711 FHLAGYGGTNVTLGIPRLREI---LIVATRTPATPMMFLSLSMDDEKKCQEFLTEFKRIP 767
Query: 346 IADVLEKIDVQCEIVVXPERQLKTTMKFT 432
+ DV+E+ V+ + E +L+ ++ T
Sbjct: 768 LKDVVEQFTVRESMNAISEVRLERKIEVT 796
Score = 48.4 bits (110), Expect = 2e-04
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = +3
Query: 75 FLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ S PGE VG++AA++IGEP+TQMTLNTF
Sbjct: 680 YFSSQIQPGEVVGVIAAEAIGEPATQMTLNTF 711
>UniRef50_Q4PB85 Cluster: DNA-directed RNA polymerase; n=1; Ustilago
maydis|Rep: DNA-directed RNA polymerase - Ustilago maydis
(Smut fungus)
Length = 1795
Score = 58.0 bits (134), Expect = 2e-07
Identities = 43/116 (37%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLN--VSDVTKKAEKLRQKLNRV 342
FHFAG G NVTLGIPRLREI KTP M +P L+ +D K K +L
Sbjct: 1295 FHFAGHGAANVTLGIPRLREIVMTASQHIKTPIMRLPVLDGITADQIKTFCKDGSRLVLS 1354
Query: 343 TIAD---VLEKIDVQCEIVVXPERQLKTTMKFTFLPHKQYKTQYAVKPTQIIKHMQ 501
+ D V EKI + E RQ T++ F P + K +Y I+ +Q
Sbjct: 1355 QVIDEAIVTEKISPKSE-GTGFHRQKTYTVRLNFYPADECKEEYNCTTAHILHGLQ 1409
Score = 52.4 bits (120), Expect = 1e-05
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+ PGE VGLLAAQ +GEPSTQMTLNTF F
Sbjct: 1268 LVDPGEAVGLLAAQGVGEPSTQMTLNTFHF 1297
>UniRef50_Q8SSC4 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=15; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB1 - Encephalitozoon cuniculi
Length = 1599
Score = 57.2 bits (132), Expect = 4e-07
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +3
Query: 54 VEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
VEV++AK L++ +P E VG LAAQS+GEP+TQMTLNTF
Sbjct: 1031 VEVIDAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTF 1069
Score = 33.1 bits (72), Expect = 7.3
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEK-LRQKLNRVT 345
FH AG VT+G+PRL+EI N KTP+M I + +A K ++ ++ +T
Sbjct: 1069 FHLAGVAS-TVTMGVPRLKEIFN-VTKNLKTPSMKIYLDREHGKSIEAAKTIQNEIECLT 1126
Query: 346 IADV 357
+ D+
Sbjct: 1127 VKDL 1130
>UniRef50_A3BPR9 Cluster: DNA-directed RNA polymerase; n=7;
Magnoliophyta|Rep: DNA-directed RNA polymerase - Oryza
sativa subsp. japonica (Rice)
Length = 1507
Score = 56.4 bits (130), Expect = 7e-07
Identities = 23/38 (60%), Positives = 33/38 (86%)
Frame = +3
Query: 63 MNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+ ++FL+S+ +PGE +G +AAQSIGEP+TQMTLNTF +
Sbjct: 720 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 757
Score = 42.7 bits (96), Expect = 0.009
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAE 315
FH+AG NVTLG+PRLREI N + KTP++ + +L +V KK E
Sbjct: 755 FHYAGVSAKNVTLGVPRLREIIN-VAKKIKTPSLSV-YLK-PEVNKKKE 800
>UniRef50_A1RWW4 Cluster: DNA-directed RNA polymerase, subunit A'';
n=1; Thermofilum pendens Hrk 5|Rep: DNA-directed RNA
polymerase, subunit A'' - Thermofilum pendens (strain
Hrk 5)
Length = 403
Score = 56.0 bits (129), Expect = 9e-07
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = +3
Query: 72 KFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPFCRSR 188
++L S+ SPGE VG++AAQSIGEP+TQMTL TF F R
Sbjct: 53 RYLSSLVSPGEAVGMVAAQSIGEPATQMTLRTFHFAGVR 91
Score = 39.9 bits (89), Expect = 0.064
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDI 276
FHFAG ++NVTLG+PRL EI D E TP M++
Sbjct: 85 FHFAGVRELNVTLGLPRLIEIV-DLRREPSTPIMEV 119
>UniRef50_Q4SF83 Cluster: DNA-directed RNA polymerase; n=1; Tetraodon
nigroviridis|Rep: DNA-directed RNA polymerase - Tetraodon
nigroviridis (Green puffer)
Length = 1745
Score = 55.6 bits (128), Expect = 1e-06
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +3
Query: 63 MNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+ KF +S+A PGE VG LAAQS+GEP+TQMTLNTF +
Sbjct: 981 IETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHY 1018
Score = 42.3 bits (95), Expect = 0.012
Identities = 28/80 (35%), Positives = 41/80 (51%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH+AG NVTLG+PRL+E+ N KTP++ + FL + + AE+ + L R+
Sbjct: 1016 FHYAGVSAKNVTLGVPRLKELIN-ISKRPKTPSLTV-FL-LGQAARDAERAKDILCRLE- 1071
Query: 349 ADVLEKIDVQCEIVVXPERQ 408
L K+ I P Q
Sbjct: 1072 HTTLRKVTANTAIYYDPNPQ 1091
>UniRef50_A5K7T9 Cluster: DNA-directed RNA polymerase; n=1; Plasmodium
vivax|Rep: DNA-directed RNA polymerase - Plasmodium vivax
Length = 1946
Score = 55.6 bits (128), Expect = 1e-06
Identities = 29/63 (46%), Positives = 40/63 (63%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MNVTLG+PR++EI N S +TP ++IP L V D A ++ KL + T+
Sbjct: 1474 FHFAGVASMNVTLGVPRIKEIIN-ASSTIQTPILNIP-LQVKDSYNFALMMKSKLEKTTV 1531
Query: 349 ADV 357
D+
Sbjct: 1532 RDI 1534
Score = 48.4 bits (110), Expect = 2e-04
Identities = 20/36 (55%), Positives = 29/36 (80%)
Frame = +3
Query: 69 AKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+K+ + +++PG+ VG ++AQSIGEP TQMTL TF F
Sbjct: 1441 SKYFKYISAPGDAVGSISAQSIGEPGTQMTLKTFHF 1476
>UniRef50_P16355 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=3; Trypanosoma brucei|Rep: DNA-directed RNA polymerase
I subunit RPA1 - Trypanosoma brucei brucei
Length = 1744
Score = 55.6 bits (128), Expect = 1e-06
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +3
Query: 42 KKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+K ++ + L ++ PGEPVGLLAAQ+ GEPSTQMTLNTF
Sbjct: 1141 EKTLADITARRRLWALCEPGEPVGLLAAQAAGEPSTQMTLNTF 1183
>UniRef50_Q9AXN0 Cluster: DNA-directed RNA polymerase; n=4;
Eukaryota|Rep: DNA-directed RNA polymerase -
Glaucosphaera vacuolata
Length = 1746
Score = 55.2 bits (127), Expect = 2e-06
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Frame = +3
Query: 21 LYESYTDKKKFVEVMNA---KFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
L E DKK F+ ++ +FL + PGE +G +A QSIGEP+TQMTLNTF F
Sbjct: 1050 LKEYRLDKKAFMHLLGEIENRFLHAKCPPGEMIGAVAPQSIGEPATQMTLNTFHF 1104
Score = 43.6 bits (98), Expect = 0.005
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFL-NVSDVTKKAEKLRQKLNRVT 345
FHFAG NVTLG+PRL+EI N KTP++ + + ++A++++ +L T
Sbjct: 1102 FHFAGVSAKNVTLGVPRLKEIIN-VAKHCKTPSLTVYLRGEAARDAERAKQVQAELQHTT 1160
Query: 346 IADVLEKIDV 375
+ V + ++
Sbjct: 1161 LNHVTQSTEI 1170
>UniRef50_Q7RQQ6 Cluster: DNA-directed RNA polymerase; n=9; Plasmodium
(Vinckeia)|Rep: DNA-directed RNA polymerase - Plasmodium
yoelii yoelii
Length = 2020
Score = 55.2 bits (127), Expect = 2e-06
Identities = 30/67 (44%), Positives = 42/67 (62%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MNVTLG+PR++EI N S +TP ++IP L + D A ++ KL + +I
Sbjct: 1499 FHFAGVASMNVTLGVPRIKEIIN-ASSIIQTPILNIP-LRIKDNYNFALMMKSKLEKTSI 1556
Query: 349 ADVLEKI 369
D+ E I
Sbjct: 1557 RDICEYI 1563
Score = 50.0 bits (114), Expect = 6e-05
Identities = 22/42 (52%), Positives = 31/42 (73%)
Frame = +3
Query: 51 FVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
F+ +K+ + ++SPG+ VG ++AQSIGEP TQMTL TF F
Sbjct: 1460 FIYFNISKYFKYISSPGDAVGSISAQSIGEPGTQMTLKTFHF 1501
>UniRef50_Q7RJK4 Cluster: DNA-directed RNA polymerase; n=13;
Eukaryota|Rep: DNA-directed RNA polymerase - Plasmodium
yoelii yoelii
Length = 2594
Score = 55.2 bits (127), Expect = 2e-06
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +3
Query: 60 VMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
++ +K+ S+ SPGE +G+L AQS GEP+TQMTLNTF
Sbjct: 1822 LLRSKYFHSLCSPGESIGILVAQSFGEPATQMTLNTF 1858
>UniRef50_Q4D133 Cluster: DNA-directed RNA polymerase; n=7;
Trypanosomatidae|Rep: DNA-directed RNA polymerase -
Trypanosoma cruzi
Length = 1802
Score = 55.2 bits (127), Expect = 2e-06
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +3
Query: 57 EVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
E+ ++ +++ PGEPVGLLAAQ+ GEPSTQMTLNTF
Sbjct: 1230 ELATSRRVKAFCDPGEPVGLLAAQAAGEPSTQMTLNTF 1267
>UniRef50_Q8TCW3 Cluster: DNA-directed RNA polymerase; n=17;
Metazoa|Rep: DNA-directed RNA polymerase - Homo sapiens
(Human)
Length = 435
Score = 55.2 bits (127), Expect = 2e-06
Identities = 25/47 (53%), Positives = 30/47 (63%)
Frame = +3
Query: 36 TDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
T +KF+E K++ + PG VG L AQSIGEP TQMTL TF F
Sbjct: 278 TQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHF 324
Score = 41.5 bits (93), Expect = 0.021
Identities = 22/68 (32%), Positives = 37/68 (54%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MN+TLG+PR++EI N TP + L+ D A ++ ++ + +
Sbjct: 322 FHFAGVASMNITLGVPRIKEIIN-ASKAISTPIITAQ-LDKDDDADYARLVKGRIEKTLL 379
Query: 349 ADVLEKID 372
++ E I+
Sbjct: 380 GEISEYIE 387
>UniRef50_P27625 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=6; Eukaryota|Rep: DNA-directed RNA polymerase III
subunit RPC1 - Plasmodium falciparum
Length = 2339
Score = 55.2 bits (127), Expect = 2e-06
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MNVTLG+PR++EI N + +TP ++IP L V+D A ++ KL + TI
Sbjct: 1803 FHFAGVASMNVTLGVPRIKEIIN-ASNSIQTPILNIP-LEVNDNYNFALMMKSKLEKTTI 1860
Query: 349 ADV 357
D+
Sbjct: 1861 RDI 1863
Score = 48.0 bits (109), Expect = 2e-04
Identities = 20/35 (57%), Positives = 28/35 (80%)
Frame = +3
Query: 72 KFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
K+ + +++PG+ VG ++AQSIGEP TQMTL TF F
Sbjct: 1771 KYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHF 1805
>UniRef50_O14802 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=17; Bilateria|Rep: DNA-directed RNA polymerase
III subunit RPC1 - Homo sapiens (Human)
Length = 1391
Score = 55.2 bits (127), Expect = 2e-06
Identities = 25/47 (53%), Positives = 30/47 (63%)
Frame = +3
Query: 36 TDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
T +KF+E K++ + PG VG L AQSIGEP TQMTL TF F
Sbjct: 1009 TQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHF 1055
Score = 39.9 bits (89), Expect = 0.064
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHF G MN+TLG+PR++EI N TP + L+ D A ++ ++ + +
Sbjct: 1053 FHFGGVASMNITLGVPRIKEIIN-ASKAISTPIITAQ-LDKDDDADYARLVKGRIEKTLL 1110
Query: 349 ADVLEKID 372
++ E I+
Sbjct: 1111 GEISEYIE 1118
>UniRef50_Q7YYV9 Cluster: DNA-directed RNA polymerase; n=3;
Cryptosporidium|Rep: DNA-directed RNA polymerase -
Cryptosporidium parvum
Length = 1907
Score = 54.8 bits (126), Expect = 2e-06
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = +3
Query: 48 KFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+F++ +K+++++ PGE VG +AAQSIGEP TQMTL TF F
Sbjct: 1480 EFIKASWSKYMKAITEPGEAVGAIAAQSIGEPGTQMTLKTFHF 1522
Score = 43.2 bits (97), Expect = 0.007
Identities = 24/68 (35%), Positives = 40/68 (58%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MNVTLG+PR++EI N ++ TP ++ N SD A+ ++ + + +
Sbjct: 1520 FHFAGVASMNVTLGVPRIKEIIN-AATKILTPIIEAKLENDSDF-NYAQIVKGSIVKTLL 1577
Query: 349 ADVLEKID 372
+V+ I+
Sbjct: 1578 NEVVSDIE 1585
>UniRef50_Q8SS15 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA polymerase
- Encephalitozoon cuniculi
Length = 1395
Score = 54.8 bits (126), Expect = 2e-06
Identities = 23/33 (69%), Positives = 30/33 (90%)
Frame = +3
Query: 72 KFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+++ S+A PGE VG++AAQS+GEPSTQMTLNTF
Sbjct: 953 RYICSLADPGESVGVIAAQSVGEPSTQMTLNTF 985
Score = 48.0 bits (109), Expect = 2e-04
Identities = 28/75 (37%), Positives = 41/75 (54%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH AG G NVTLG+PRLREI +TP + +P + + + + L RVT+
Sbjct: 985 FHLAGVGAKNVTLGVPRLREILITASKSIRTPLITVPIKR-----RVSFDITECLRRVTL 1039
Query: 349 ADVLEKIDVQCEIVV 393
D +++ V EIV+
Sbjct: 1040 KDCVKRFGVTEEIVM 1054
>UniRef50_P24928 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=473; cellular organisms|Rep: DNA-directed RNA
polymerase II subunit RPB1 - Homo sapiens (Human)
Length = 1970
Score = 54.8 bits (126), Expect = 2e-06
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = +3
Query: 63 MNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+ +KF +++A PGE VG LAAQS+GEP+TQMTLNTF +
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHY 1109
Score = 42.7 bits (96), Expect = 0.009
Identities = 28/80 (35%), Positives = 41/80 (51%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH+AG NVTLG+PRL+E+ N + KTP++ + L S + AE+ + L R+
Sbjct: 1107 FHYAGVSAKNVTLGVPRLKELIN-ISKKPKTPSLTVFLLGQS--ARDAERAKDILCRLE- 1162
Query: 349 ADVLEKIDVQCEIVVXPERQ 408
L K+ I P Q
Sbjct: 1163 HTTLRKVTANTAIYYDPNPQ 1182
>UniRef50_Q4N0F9 Cluster: DNA-directed RNA polymerase II largest
subunit, putative; n=3; Apicomplexa|Rep: DNA-directed RNA
polymerase II largest subunit, putative - Theileria parva
Length = 1681
Score = 54.4 bits (125), Expect = 3e-06
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +3
Query: 75 FLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
F +++A+PGE VG +AAQSIGEP+TQMTLNTF F
Sbjct: 1068 FFKAIANPGECVGAIAAQSIGEPATQMTLNTFHF 1101
Score = 45.2 bits (102), Expect = 0.002
Identities = 27/77 (35%), Positives = 45/77 (58%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG NVTLG+PRL+E+ N ++ +TP++ I +L+ S + K E+ ++ +
Sbjct: 1099 FHFAGVSSKNVTLGLPRLKELIN-VVTNVRTPSLTI-YLDPS-INKDQERAKEMQTLLEY 1155
Query: 349 ADVLEKIDVQCEIVVXP 399
+ EKI + +V P
Sbjct: 1156 TN-FEKIVLSYTVVYDP 1171
>UniRef50_Q2N100 Cluster: RNA polymerase I large subunit; n=1;
Aphrocallistes vastus|Rep: RNA polymerase I large
subunit - Aphrocallistes vastus
Length = 267
Score = 54.4 bits (125), Expect = 3e-06
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3
Query: 45 KKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTL 161
++F K+L S+ PG+PVG+LAAQSIGEPSTQMTL
Sbjct: 229 EEFRTCFELKYLSSLCQPGDPVGILAAQSIGEPSTQMTL 267
>UniRef50_Q27095 Cluster: DNA-directed RNA polymerase; n=2;
Trichomonas vaginalis|Rep: DNA-directed RNA polymerase -
Trichomonas vaginalis
Length = 1661
Score = 54.4 bits (125), Expect = 3e-06
Identities = 25/42 (59%), Positives = 30/42 (71%)
Frame = +3
Query: 72 KFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPFCRSR*HE 197
+F S+ +PGE VG +A QSIGEPSTQMTLNTF F H+
Sbjct: 1072 RFYRSIVAPGEMVGTIAGQSIGEPSTQMTLNTFHFAGISAHD 1113
Score = 40.7 bits (91), Expect = 0.036
Identities = 26/77 (33%), Positives = 40/77 (51%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG +VTLG+PRL E+ N +TP++ + F DV K E ++ ++
Sbjct: 1104 FHFAGISAHDVTLGVPRLNELMN-LAKHIRTPSVTVEF--ERDVAKDEEIVKAVRAQIES 1160
Query: 349 ADVLEKIDVQCEIVVXP 399
A +K ++ EI P
Sbjct: 1161 AS-FKKFVIKAEIYYDP 1176
>UniRef50_A5K7P4 Cluster: DNA-directed RNA polymerase; n=13;
Eukaryota|Rep: DNA-directed RNA polymerase - Plasmodium
vivax
Length = 2379
Score = 54.4 bits (125), Expect = 3e-06
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = +3
Query: 54 VEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
++ + F +S+ PGE VG LAAQSIGEP+TQMTLNTF F
Sbjct: 1324 LQEIEKNFYKSLCHPGECVGALAAQSIGEPATQMTLNTFHF 1364
Score = 48.8 bits (111), Expect = 1e-04
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLN--VSDVTKKAEKLRQKLNRV 342
FHFAG G NVTLG+PRL+E+ N + KTP+ I +L+ VS+ +KA+ + KL
Sbjct: 1362 FHFAGVGSKNVTLGVPRLKELIN-IVKNVKTPSTTI-YLDDVVSNDQQKAKDILTKLEYT 1419
Query: 343 TI 348
T+
Sbjct: 1420 TL 1421
>UniRef50_Q84KP6 Cluster: DNA-directed RNA polymerase; n=3;
Eukaryota|Rep: DNA-directed RNA polymerase -
Cyanidioschyzon merolae (Red alga)
Length = 1819
Score = 54.0 bits (124), Expect = 4e-06
Identities = 23/38 (60%), Positives = 31/38 (81%)
Frame = +3
Query: 63 MNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+ +F+ + A+PGE VG +AAQS+GEP+TQMTLNTF F
Sbjct: 1063 IETRFVRARATPGEMVGAVAAQSLGEPATQMTLNTFHF 1100
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG NVTLG+PRL+E+ N + KTP++ + +L + A ++ +L + +
Sbjct: 1098 FHFAGVSAKNVTLGVPRLKELIN-VARQAKTPSVTV-YLKSGKDKELANIVQSELEQCRL 1155
Query: 349 ADVLE 363
DV+E
Sbjct: 1156 RDVVE 1160
>UniRef50_Q4UI00 Cluster: DNA-directed RNA polymerase; n=2;
Theileria|Rep: DNA-directed RNA polymerase - Theileria
annulata
Length = 1999
Score = 54.0 bits (124), Expect = 4e-06
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFL--NVSDVTKKAEKLRQKLNRV 342
FH AG G NVTLGIPRL EI + S TP +P L N ++ + AE L ++
Sbjct: 1424 FHLAGHGAANVTLGIPRLVEILQN-TSHCSTPYFSVPILGKNEDEIAENAENAINALRKI 1482
Query: 343 TIADVLEKIDVQCEIVV 393
++D+++ + ++ + V
Sbjct: 1483 YLSDIVQSVGMETNVYV 1499
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/52 (48%), Positives = 29/52 (55%)
Frame = +3
Query: 15 NSLYESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
NS Y ++ A F PGE VG +A QSIGEP+TQMTLNTF
Sbjct: 1373 NSKTGVYNKNRETDSNFKAYFERCKCDPGEAVGCIAGQSIGEPATQMTLNTF 1424
>UniRef50_Q9YAU2 Cluster: DNA-directed RNA polymerase subunit A'';
n=19; Archaea|Rep: DNA-directed RNA polymerase subunit
A'' - Aeropyrum pernix
Length = 407
Score = 54.0 bits (124), Expect = 4e-06
Identities = 27/49 (55%), Positives = 32/49 (65%)
Frame = +3
Query: 30 SYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
S DK V+ +L S+A PGE VG +AAQSIGEP TQMTL TF +
Sbjct: 37 SEEDKISVVKETIRTYLRSLAQPGEAVGTVAAQSIGEPGTQMTLRTFHY 85
Score = 39.5 bits (88), Expect = 0.084
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDV----TKKAEKLRQKLN 336
FH+AG + +VTLG+PRL EI + +TP+ + ++ + D +KA++ +K+
Sbjct: 83 FHYAGIMEFDVTLGLPRLIEI----VDAKQTPSQPLMYIYLKDEYAKDLEKAKEAARKIE 138
Query: 337 RVTIADVLEKID 372
T+ +++ I+
Sbjct: 139 YTTLEKIIDNIE 150
>UniRef50_P14248 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=3; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB1 - Plasmodium falciparum (isolate CDC /
Honduras)
Length = 2452
Score = 54.0 bits (124), Expect = 4e-06
Identities = 25/34 (73%), Positives = 28/34 (82%)
Frame = +3
Query: 75 FLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
F +S+ PGE VG LAAQSIGEP+TQMTLNTF F
Sbjct: 1394 FYKSLCHPGECVGALAAQSIGEPATQMTLNTFHF 1427
Score = 48.8 bits (111), Expect = 1e-04
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLN--VSDVTKKAEKLRQKLNRV 342
FHFAG G NVTLG+PRL+E+ N + KTP+ I +L+ VS+ +KA+ + KL
Sbjct: 1425 FHFAGVGSKNVTLGVPRLKELIN-IVKNVKTPSTTI-YLDDMVSNDQQKAKDILTKLEYT 1482
Query: 343 TI 348
T+
Sbjct: 1483 TL 1484
>UniRef50_Q7R0K2 Cluster: DNA-directed RNA polymerase; n=1; Giardia
lamblia ATCC 50803|Rep: DNA-directed RNA polymerase -
Giardia lamblia ATCC 50803
Length = 2142
Score = 53.6 bits (123), Expect = 5e-06
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = +3
Query: 39 DKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
D F + KF+ S+ +PG VG++AAQS GEPSTQ+TLNTF
Sbjct: 1594 DSAYFKLLAYTKFIRSLVAPGSAVGVIAAQSTGEPSTQLTLNTF 1637
Score = 37.1 bits (82), Expect = 0.45
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREI 231
FH AG G +N T+G+PRLREI
Sbjct: 1637 FHLAGHGGVNATMGVPRLREI 1657
>UniRef50_Q3SE61 Cluster: DNA-directed RNA polymerase; n=2; Paramecium
tetraurelia|Rep: DNA-directed RNA polymerase - Paramecium
tetraurelia
Length = 1751
Score = 53.6 bits (123), Expect = 5e-06
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +3
Query: 72 KFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
K +SMA PGE VG +AAQS+GEP+TQMTLNTF
Sbjct: 1068 KLKKSMAHPGEAVGAIAAQSLGEPTTQMTLNTF 1100
Score = 40.7 bits (91), Expect = 0.036
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = +1
Query: 169 FHFAG-RGDMNVTLGIPRLREIPNDCISETKTPNMDIPF 282
FH +G GD NVTLG+PRL+E+ D +TKTP++ I F
Sbjct: 1100 FHKSGVTGDKNVTLGVPRLQEL-LDASKKTKTPSLTIYF 1137
>UniRef50_Q26008 Cluster: DNA-directed RNA polymerase; n=2; Plasmodium
falciparum|Rep: DNA-directed RNA polymerase - Plasmodium
falciparum
Length = 2910
Score = 53.6 bits (123), Expect = 5e-06
Identities = 21/37 (56%), Positives = 30/37 (81%)
Frame = +3
Query: 60 VMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
++ +K+ S+ +PGE +G+L AQS GEP+TQMTLNTF
Sbjct: 2045 LLKSKYYNSLCNPGESIGILVAQSFGEPATQMTLNTF 2081
>UniRef50_A5KB21 Cluster: DNA-directed RNA polymerase; n=1; Plasmodium
vivax|Rep: DNA-directed RNA polymerase - Plasmodium vivax
Length = 2695
Score = 53.6 bits (123), Expect = 5e-06
Identities = 21/37 (56%), Positives = 29/37 (78%)
Frame = +3
Query: 60 VMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
++ +K+ S+ PGE +G+L AQS GEP+TQMTLNTF
Sbjct: 1794 LLKSKYFRSLCDPGESIGILVAQSFGEPATQMTLNTF 1830
>UniRef50_O28390 Cluster: DNA-directed RNA polymerase subunit A'';
n=7; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit A'' - Archaeoglobus fulgidus
Length = 380
Score = 53.6 bits (123), Expect = 5e-06
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = +3
Query: 36 TDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
T+ KK VE +L ++ PGE G++AAQSIGEP TQMT+ TF +
Sbjct: 35 TEAKKVVEKCFQAYLANLMEPGEAAGIVAAQSIGEPGTQMTMRTFHY 81
Score = 49.2 bits (112), Expect = 1e-04
Identities = 29/73 (39%), Positives = 40/73 (54%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH+AG ++NVTLG+PRL EI D TP M I L + K EK R+ NR+
Sbjct: 79 FHYAGVAEINVTLGLPRLIEI-LDVRKNPSTPMMTIRLL--PEYAKDREKAREVANRIEA 135
Query: 349 ADVLEKIDVQCEI 387
V + D++ +I
Sbjct: 136 TYVKDVADIEVDI 148
>UniRef50_P08968 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=7; Trypanosomatidae|Rep: DNA-directed RNA
polymerase III subunit RPC1 - Trypanosoma brucei brucei
Length = 1530
Score = 53.6 bits (123), Expect = 5e-06
Identities = 23/43 (53%), Positives = 29/43 (67%)
Frame = +3
Query: 48 KFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+F+ +K+L PG P G +AAQS+GEPSTQMTL TF F
Sbjct: 1125 RFIAQCASKYLRKACEPGTPCGAIAAQSVGEPSTQMTLRTFHF 1167
Score = 37.5 bits (83), Expect = 0.34
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFL------NVSDV-TKKAEKLRQ 327
FHFAG M++T G+PRL E+ N TP + P L N ++ K+A ++
Sbjct: 1165 FHFAGVASMSITQGVPRLVEVIN-ANRNIATPVVTAPVLLMEGEENHCEIFRKRARFVKA 1223
Query: 328 KLNRVTIADVLEKIDVQC 381
++ RV + +V+ +I C
Sbjct: 1224 QIERVLLREVVSEIVEVC 1241
>UniRef50_A5DCV3 Cluster: DNA-directed RNA polymerase II subunit
RPB1; n=193; Eukaryota|Rep: DNA-directed RNA polymerase
II subunit RPB1 - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 1579
Score = 53.6 bits (123), Expect = 5e-06
Identities = 23/38 (60%), Positives = 31/38 (81%)
Frame = +3
Query: 63 MNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+ +F +S+ PGE VG++AAQSIGEP+TQMTLNTF +
Sbjct: 882 IETQFQKSLVHPGEMVGVIAAQSIGEPATQMTLNTFHY 919
Score = 41.9 bits (94), Expect = 0.016
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPF-LNVSDVTKKAEKLRQKLNRVT 345
FH+AG NVTLG+PRL+EI N KTP + + +++ +KA+ ++ + T
Sbjct: 917 FHYAGVSSKNVTLGVPRLKEILN-VAKNIKTPALTVYLEKDIAADIEKAKVVQSAIEHTT 975
Query: 346 IADVLEKIDV 375
+ +V ++
Sbjct: 976 LKNVTASTEI 985
>UniRef50_A6SCV1 Cluster: DNA-directed RNA polymerase; n=19;
Fungi/Metazoa group|Rep: DNA-directed RNA polymerase -
Botryotinia fuckeliana B05.10
Length = 1468
Score = 53.2 bits (122), Expect = 6e-06
Identities = 26/49 (53%), Positives = 30/49 (61%)
Frame = +3
Query: 30 SYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
S T KKF E+ K+ + PG VG + AQSIGEP TQMTL TF F
Sbjct: 1058 SETTLKKFCELCLEKYSRAKVEPGHAVGAVGAQSIGEPGTQMTLKTFHF 1106
Score = 42.3 bits (95), Expect = 0.012
Identities = 22/64 (34%), Positives = 37/64 (57%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MN+T G+PR++EI N TP + P LN ++ + A ++ ++ + +
Sbjct: 1104 FHFAGVAGMNLTAGVPRIKEIIN-ASKTIATPFVKCPLLNSKEL-EVARLVKARMEKTYL 1161
Query: 349 ADVL 360
+VL
Sbjct: 1162 HEVL 1165
>UniRef50_Q9AW39 Cluster: DNA-directed RNA polymerase; n=1; Guillardia
theta|Rep: DNA-directed RNA polymerase - Guillardia theta
(Cryptomonas phi)
Length = 1434
Score = 52.8 bits (121), Expect = 8e-06
Identities = 20/42 (47%), Positives = 30/42 (71%)
Frame = +3
Query: 51 FVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+ ++N+ + E++ PGE G+L Q+IGEP TQMTLNTF +
Sbjct: 1070 YQNILNSNYFENLIEPGESTGILCGQAIGEPCTQMTLNTFHY 1111
Score = 32.7 bits (71), Expect = 9.7
Identities = 24/114 (21%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKK-AEKLRQKLNRVT 345
FH+AG+ + G+PRL+E+ + + N + S + +K EK+++ +
Sbjct: 1109 FHYAGKISSHGKQGLPRLKEML--LYNSKNSTNFLVNCRLKSIINRKYLEKVKRNFSNYK 1166
Query: 346 IADVLEKIDVQCEIVVXPERQLKTTMKFTFLPHKQYKTQYAVKPTQIIKHMQNK 507
+ D++E I++ ++++ ++KF K + Q ++ I K N+
Sbjct: 1167 LFDLVESIELYYN---YEKKRINLSLKFKIKKKKVFVAQKLMENNNIFKCFTNQ 1217
>UniRef50_Q3LWE3 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1510
Score = 52.8 bits (121), Expect = 8e-06
Identities = 24/42 (57%), Positives = 34/42 (80%)
Frame = +3
Query: 51 FVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
F ++ N K+ +S+ +PGE VG++ AQSIGEP+TQMTLNTF +
Sbjct: 1029 FKQIEN-KYNKSLTTPGECVGVIGAQSIGEPTTQMTLNTFHY 1069
>UniRef50_Q010D7 Cluster: DNA-directed RNA polymerase; n=4;
Eukaryota|Rep: DNA-directed RNA polymerase - Ostreococcus
tauri
Length = 1673
Score = 52.8 bits (121), Expect = 8e-06
Identities = 22/38 (57%), Positives = 32/38 (84%)
Frame = +3
Query: 63 MNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+ ++F ++A PG+ +G++AAQSIGEP+TQMTLNTF F
Sbjct: 1065 VESRFKMALAPPGDGIGVVAAQSIGEPATQMTLNTFHF 1102
Score = 43.2 bits (97), Expect = 0.007
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLN--VSDVTKKAEKLRQKLNRV 342
FHFAG NVTLG+PRL+EI N + KTP++ + SD T KA+ ++ L
Sbjct: 1100 FHFAGVSAKNVTLGVPRLKEIIN-IAKQIKTPSLTVALKPEFASDRT-KAKDVQASLEYT 1157
Query: 343 TIADVLEKIDV 375
T+ V +V
Sbjct: 1158 TLHSVAAVTEV 1168
>UniRef50_Q8MX30 Cluster: DNA-directed RNA polymerase; n=1; Naegleria
gruberi|Rep: DNA-directed RNA polymerase - Naegleria
gruberi
Length = 1590
Score = 52.8 bits (121), Expect = 8e-06
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = +3
Query: 63 MNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+ +F +A PGE VG +AAQSIGEP+TQMTLNTF F
Sbjct: 1015 LELRFHNCLAQPGEMVGSVAAQSIGEPATQMTLNTFHF 1052
Score = 44.4 bits (100), Expect = 0.003
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDV--TKKAEKLRQKLNRV 342
FHFAG NVTLG+PRL+E+ N KTP + I +LN + +KA+ +++ L
Sbjct: 1050 FHFAGVSSKNVTLGVPRLKELLN-VAKNIKTPGLTI-YLNNEYIGDFEKAKMVKEDLEYT 1107
Query: 343 TIADV 357
T+ V
Sbjct: 1108 TLGHV 1112
>UniRef50_A7AWJ0 Cluster: DNA-directed RNA polymerase II largest
subunit, putative; n=2; Eukaryota|Rep: DNA-directed RNA
polymerase II largest subunit, putative - Babesia bovis
Length = 1746
Score = 52.8 bits (121), Expect = 8e-06
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +3
Query: 75 FLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
F +S+ PGE VG +AAQSIGEP+TQMTLNTF F
Sbjct: 1071 FYKSICHPGECVGAIAAQSIGEPATQMTLNTFHF 1104
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPF-LNVSDVTKKAEKLRQKLNRVT 345
FHFAG NVTLG+PRL+E+ N + KTP++ I V+ ++A+ ++ +L T
Sbjct: 1102 FHFAGVSSKNVTLGLPRLKELIN-VVRNVKTPSLTIHLDRGVAHDQERAKDMQTRLEYTT 1160
Query: 346 IADVL 360
+ V+
Sbjct: 1161 LDKVV 1165
>UniRef50_A7AP17 Cluster: RNA polymerase Rpb1, domain containing
protein; n=1; Babesia bovis|Rep: RNA polymerase Rpb1,
domain containing protein - Babesia bovis
Length = 1541
Score = 52.8 bits (121), Expect = 8e-06
Identities = 31/85 (36%), Positives = 48/85 (56%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MNVTLG+PR++EI N S +TP +++P +N D + A ++ ++ + T+
Sbjct: 1221 FHFAGVASMNVTLGVPRIKEIIN-ASSTIQTPIIEVPLINNKDF-EYALMVKARIEKTTL 1278
Query: 349 ADVLEKIDVQCEIVVXPERQLKTTM 423
V I EI QL+ T+
Sbjct: 1279 GQVCSDIK---EIFGPTGAQLRVTL 1300
Score = 47.2 bits (107), Expect = 4e-04
Identities = 22/43 (51%), Positives = 27/43 (62%)
Frame = +3
Query: 48 KFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+FV + ++ PGE +G L AQSIGEP TQMTL TF F
Sbjct: 1181 EFVRCCWKDYQRAICVPGEAIGALGAQSIGEPGTQMTLKTFHF 1223
>UniRef50_Q74MX8 Cluster: NEQ427; n=1; Nanoarchaeum equitans|Rep:
NEQ427 - Nanoarchaeum equitans
Length = 374
Score = 52.8 bits (121), Expect = 8e-06
Identities = 21/45 (46%), Positives = 32/45 (71%)
Frame = +3
Query: 42 KKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
K++ ++ + K+L S+ P EP+G++ AQS GEP+TQM LN F F
Sbjct: 26 KEQLLKKLEEKYLNSLIDPQEPIGIITAQSFGEPATQMLLNAFHF 70
Score = 43.2 bits (97), Expect = 0.007
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG ++ + G+PRL EI N + P+M I +L +D K AE+L KL V +
Sbjct: 68 FHFAGVSELQLVTGLPRLIEILN-AKKKPTIPSMTI-YLEKND-EKLAEELVNKLIEVKL 124
Query: 349 ADVLEKIDVQC---EIVVXPERQL 411
+D+ + I + I++ ++QL
Sbjct: 125 SDIAKSISIDVINKRIIIELDQQL 148
>UniRef50_UPI00006CF1E9 Cluster: RNA polymerase Rpb1, domain 2 family
protein; n=1; Tetrahymena thermophila SB210|Rep: RNA
polymerase Rpb1, domain 2 family protein - Tetrahymena
thermophila SB210
Length = 1759
Score = 52.4 bits (120), Expect = 1e-05
Identities = 21/35 (60%), Positives = 30/35 (85%)
Frame = +3
Query: 72 KFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
KF ++++ PGE +G ++AQS+GEP+TQMTLNTF F
Sbjct: 1103 KFKKAISHPGETIGAISAQSVGEPTTQMTLNTFHF 1137
Score = 46.4 bits (105), Expect = 7e-04
Identities = 23/40 (57%), Positives = 26/40 (65%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLN 288
FHFAG D NVTLG+PRL+EI D KTP M + F N
Sbjct: 1135 FHFAGVSDRNVTLGVPRLQEI-LDASKNVKTPEMTVFFEN 1173
>UniRef50_UPI000049A544 Cluster: DNA-directed RNA polymerase III
largest subunit; n=1; Entamoeba histolytica
HM-1:IMSS|Rep: DNA-directed RNA polymerase III largest
subunit - Entamoeba histolytica HM-1:IMSS
Length = 1379
Score = 52.4 bits (120), Expect = 1e-05
Identities = 24/44 (54%), Positives = 29/44 (65%)
Frame = +3
Query: 45 KKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
K F+ + + K L S+ G PVG LA QS+GEPSTQM L TF F
Sbjct: 1015 KDFISICHEKGLRSVCEAGTPVGALAGQSMGEPSTQMVLKTFHF 1058
Score = 46.0 bits (104), Expect = 0.001
Identities = 29/105 (27%), Positives = 54/105 (51%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MN+ LG+PR++EI N + +TP + +N DVT A ++ ++ +
Sbjct: 1056 FHFAGVASMNIALGVPRIKEIIN-ASKKIQTPIVTAKLVNSQDVT-SARIVKGRIEATRL 1113
Query: 349 ADVLEKIDVQCEIVVXPERQLKTTMKFTFLPHKQYKTQYAVKPTQ 483
++ + + +IV P + ++K F KQ + + ++ Q
Sbjct: 1114 KEIAKSV----KIVFKP-AEAYISVKLDFETIKQLELECTIEKVQ 1153
>UniRef50_Q5CUJ2 Cluster: DNA-directed RNA polymerase; n=3;
Eukaryota|Rep: DNA-directed RNA polymerase -
Cryptosporidium parvum Iowa II
Length = 1902
Score = 52.0 bits (119), Expect = 1e-05
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = +3
Query: 72 KFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+F S+A GE VG +AAQSIGEP+TQMTLNTF F
Sbjct: 1107 QFYRSLAHSGEMVGTIAAQSIGEPATQMTLNTFHF 1141
Score = 44.8 bits (101), Expect = 0.002
Identities = 28/79 (35%), Positives = 42/79 (53%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG G NVTLG+PRLRE+ N +TP + + +L S + E+ + L +
Sbjct: 1139 FHFAGVGSKNVTLGVPRLRELIN-VAKNVRTPTLTV-YLE-SGIANDQEQAKDVLTLLE- 1194
Query: 349 ADVLEKIDVQCEIVVXPER 405
+L+ I I+ PE+
Sbjct: 1195 HTMLQNITTIAHILYDPEQ 1213
>UniRef50_P04051 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=9; Dikarya|Rep: DNA-directed RNA polymerase III
subunit RPC1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1460
Score = 52.0 bits (119), Expect = 1e-05
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +3
Query: 3 KNRSNSLYE-SYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
K + LY S +KF+E+ K+ ++ PG +G + AQSIGEP TQMTL TF F
Sbjct: 1053 KTSVSQLYRISEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHF 1111
Score = 44.4 bits (100), Expect = 0.003
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MNVTLG+PR++EI N TP ++ +N +D + A ++ ++ + +
Sbjct: 1109 FHFAGVASMNVTLGVPRIKEIIN-ASKVISTPIINAVLVNDND-ERAARVVKGRVEKTLL 1166
Query: 349 ADV 357
+DV
Sbjct: 1167 SDV 1169
>UniRef50_Q9VXP9 Cluster: DNA-directed RNA polymerase; n=4;
Diptera|Rep: DNA-directed RNA polymerase - Drosophila
melanogaster (Fruit fly)
Length = 1304
Score = 51.2 bits (117), Expect = 3e-05
Identities = 23/43 (53%), Positives = 30/43 (69%)
Frame = +3
Query: 48 KFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+FV +N ++ ++ PG VG +AAQSIGEP TQMTL TF F
Sbjct: 926 QFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHF 968
Score = 43.2 bits (97), Expect = 0.007
Identities = 22/71 (30%), Positives = 39/71 (54%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MN+T G+PR+ EI N TP + N + + A +++ ++ + T+
Sbjct: 966 FHFAGVASMNITQGVPRIVEIIN-ATKTISTPIITAELENCHSM-EFARQVKARIEKTTL 1023
Query: 349 ADVLEKIDVQC 381
A++ ++V C
Sbjct: 1024 AELSSYVEVVC 1034
>UniRef50_A2DEX5 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA polymerase
- Trichomonas vaginalis G3
Length = 1657
Score = 51.2 bits (117), Expect = 3e-05
Identities = 28/68 (41%), Positives = 41/68 (60%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MNVTLG+PR+ E+ N +SE KTP + L+ D A ++ ++RVT+
Sbjct: 1026 FHFAGVASMNVTLGVPRIEEVMN-AVSEIKTPIITANLLSQRDEI-AARIVKGIIDRVTL 1083
Query: 349 ADVLEKID 372
V + I+
Sbjct: 1084 GQVCKHIE 1091
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +3
Query: 45 KKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
++FV+ + +SMA PG VG +A QSIGEP+TQMTL +F F
Sbjct: 985 EEFVKFCMHRCEKSMAEPGMTVGAVAGQSIGEPATQMTLRSFHF 1028
>UniRef50_Q6E6G2 Cluster: DNA-directed RNA polymerase; n=1;
Antonospora locustae|Rep: DNA-directed RNA polymerase -
Antonospora locustae (Nosema locustae)
Length = 1089
Score = 51.2 bits (117), Expect = 3e-05
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = +3
Query: 90 ASPGEPVGLLAAQSIGEPSTQMTLNTF 170
A PG+PVG++A QS+GEPSTQMTLNTF
Sbjct: 911 AQPGDPVGIVAGQSLGEPSTQMTLNTF 937
Score = 41.5 bits (93), Expect = 0.021
Identities = 35/128 (27%), Positives = 55/128 (42%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH AG G N+TLGIPRL EI +TP + +P +E + + V +
Sbjct: 937 FHHAGVGAKNMTLGIPRLVEILMVASKNIRTPYLTVP----------SENITEHFKTVNL 986
Query: 349 ADVLEKIDVQCEIVVXPERQLKTTMKFTFLPHKQYKTQYAVKPTQIIKHMQNKSSMKCLR 528
D L K+ V CE V + ++ TF K+ + + + + ++ NK K +
Sbjct: 987 IDCLRKLLV-CESWVIKNSERCKRLRITFEIKKEAELVKSCVEERFV-YLLNKKIKKVHK 1044
Query: 529 WCGSTPRP 552
S P
Sbjct: 1045 EVSSVAEP 1052
>UniRef50_P17545 Cluster: DNA-directed RNA polymerase II subunit
RPB1-B; n=60; Trypanosomatidae|Rep: DNA-directed RNA
polymerase II subunit RPB1-B - Trypanosoma brucei brucei
Length = 1766
Score = 51.2 bits (117), Expect = 3e-05
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = +3
Query: 63 MNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ K+ +S+ +PGE +G +AAQS GEP+TQMTLNTF
Sbjct: 1070 IRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTF 1105
Score = 37.9 bits (84), Expect = 0.26
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH AG NVTLG+PRL E+ N ++ K +M + D + A+K + + T+
Sbjct: 1105 FHNAGISSKNVTLGVPRLLELLNVSRNQ-KHASMTVSLFPPYDEKRNAQKAQHLIEYCTL 1163
Query: 349 ADVLEKI 369
+ +I
Sbjct: 1164 ESITRRI 1170
>UniRef50_Q9BMP2 Cluster: DNA-directed RNA polymerase; n=2;
Stylonychia|Rep: DNA-directed RNA polymerase -
Stylonychia mytilus
Length = 1678
Score = 50.8 bits (116), Expect = 3e-05
Identities = 21/38 (55%), Positives = 31/38 (81%)
Frame = +3
Query: 63 MNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+ ++F +++ +PGE VG + AQS+GEP+TQMTLNTF F
Sbjct: 965 IKSRFDQALVNPGEMVGSIGAQSMGEPATQMTLNTFHF 1002
Score = 42.7 bits (96), Expect = 0.009
Identities = 24/43 (55%), Positives = 27/43 (62%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSD 297
FHFAG NVTLG+PRL+EI N KTP+M I FL D
Sbjct: 1000 FHFAGVSAKNVTLGVPRLKEIIN-VAKNIKTPSMKI-FLKDKD 1040
>UniRef50_Q8MUU2 Cluster: DNA-directed RNA polymerase; n=4; Giardia
intestinalis|Rep: DNA-directed RNA polymerase - Giardia
lamblia (Giardia intestinalis)
Length = 2076
Score = 50.8 bits (116), Expect = 3e-05
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +3
Query: 48 KFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ + + KF+ SPGEPVG LA S+ EP+TQ+TLNTF
Sbjct: 1270 RILATIEEKFVRGQVSPGEPVGPLAGHSVSEPATQLTLNTF 1310
>UniRef50_Q7RXJ6 Cluster: DNA-directed RNA polymerase; n=4; root|Rep:
DNA-directed RNA polymerase - Neurospora crassa
Length = 1533
Score = 50.8 bits (116), Expect = 3e-05
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +3
Query: 45 KKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+KF+ + +KF ++ PG VG + AQSIGEP TQMTL TF F
Sbjct: 1089 RKFMNLCLSKFDKAKVEPGHAVGAVGAQSIGEPGTQMTLKTFHF 1132
Score = 39.9 bits (89), Expect = 0.064
Identities = 22/68 (32%), Positives = 37/68 (54%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG M++T G+PR++EI TP + N D+ K A ++ K+ + I
Sbjct: 1130 FHFAGVAGMSITQGVPRIKEIIG-ASKLISTPVISCELENNRDI-KAARIVKGKIEKTYI 1187
Query: 349 ADVLEKID 372
+DV+ ++
Sbjct: 1188 SDVITYVE 1195
>UniRef50_P29158 Cluster: DNA-directed RNA polymerase subunit A'';
n=1; Thermococcus celer|Rep: DNA-directed RNA polymerase
subunit A'' - Thermococcus celer
Length = 393
Score = 50.8 bits (116), Expect = 3e-05
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +3
Query: 72 KFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
++ +++ PGE +G +AAQSIGEPSTQMTLNTF +
Sbjct: 52 EYQKALIEPGEAIGTVAAQSIGEPSTQMTLNTFHY 86
Score = 35.9 bits (79), Expect = 1.0
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDI 276
FH+AG ++NVTLG+PR+ EI D TP M +
Sbjct: 84 FHYAGVAEINVTLGLPRIIEIV-DARKNPSTPIMTV 118
>UniRef50_Q4QEN2 Cluster: DNA-directed RNA polymerase I largest
subunit, putative; n=3; Leishmania|Rep: DNA-directed RNA
polymerase I largest subunit, putative - Leishmania major
Length = 1809
Score = 50.4 bits (115), Expect = 5e-05
Identities = 23/38 (60%), Positives = 28/38 (73%)
Frame = +3
Query: 57 EVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
E+ + + + GEPVGLLAAQ+ GEPSTQMTLNTF
Sbjct: 1215 ELTTRRRVRAYCDAGEPVGLLAAQAAGEPSTQMTLNTF 1252
>UniRef50_O77165 Cluster: DNA-directed RNA polymerase; n=4;
Eukaryota|Rep: DNA-directed RNA polymerase - Breviata
anathema
Length = 1690
Score = 50.4 bits (115), Expect = 5e-05
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +3
Query: 72 KFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
KF ++ +PGE VG +AAQS GEP+TQMTLNTF
Sbjct: 991 KFGRALVAPGEMVGAIAAQSFGEPTTQMTLNTF 1023
Score = 44.8 bits (101), Expect = 0.002
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDI----PFLNVSDVTKKAEKLRQKLN 336
FH AG G NVTLG+PRL+E+ N ++ +TPN+ I PF N + A K+ +
Sbjct: 1023 FHSAGVGTKNVTLGVPRLKELINVNMA-LRTPNISIFVQDPFCNSEE---NATKVPLHIK 1078
Query: 337 RVTIADVLEKIDV 375
T+ D++ + ++
Sbjct: 1079 HTTVRDLVSRAEI 1091
>UniRef50_Q0V3B7 Cluster: DNA-directed RNA polymerase; n=2;
Ascomycota|Rep: DNA-directed RNA polymerase -
Phaeosphaeria nodorum (Septoria nodorum)
Length = 1467
Score = 50.4 bits (115), Expect = 5e-05
Identities = 24/49 (48%), Positives = 29/49 (59%)
Frame = +3
Query: 30 SYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
S T F+++ K+ S PG VG + AQSIGEP TQMTL TF F
Sbjct: 1077 SQTALDTFIDLCLTKYHRSRVQPGHAVGAIGAQSIGEPGTQMTLKTFHF 1125
>UniRef50_O27126 Cluster: DNA-directed RNA polymerase subunit A'';
n=4; Methanobacteriaceae|Rep: DNA-directed RNA
polymerase subunit A'' - Methanobacterium
thermoautotrophicum
Length = 451
Score = 50.4 bits (115), Expect = 5e-05
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRV-- 342
FH+AG ++NVTLG+PRL EI D + TP M I F D+ E +R+K N++
Sbjct: 152 FHYAGVAELNVTLGLPRLIEIV-DARKKISTPTMSIYF--EGDLRYDEEFVRRKANKIGK 208
Query: 343 -TIADVLEKIDVQ 378
T+ DVL+ +Q
Sbjct: 209 STLNDVLKNFSIQ 221
Score = 41.1 bits (92), Expect = 0.028
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTFPF 176
GE VG +AAQS+GEP TQMT+ TF +
Sbjct: 129 GEAVGTVAAQSVGEPGTQMTMRTFHY 154
>UniRef50_Q91FI1 Cluster: 343L; n=1; Invertebrate iridescent virus
6|Rep: 343L - Chilo iridescent virus (CIV) (Insect
iridescent virus type 6)
Length = 462
Score = 49.6 bits (113), Expect = 8e-05
Identities = 25/50 (50%), Positives = 34/50 (68%)
Frame = +3
Query: 21 LYESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+YES K K E + +++ S+ PGE VG++ AQS+GE STQ TLNTF
Sbjct: 55 IYESLIPKLK--EEIEKQYVNSLIDPGECVGIIGAQSMGEYSTQATLNTF 102
>UniRef50_Q0PQ09 Cluster: DNA-directed RNA polymerase; n=8;
Pezizomycotina|Rep: DNA-directed RNA polymerase -
Dermatocarpon miniatum
Length = 1011
Score = 49.6 bits (113), Expect = 8e-05
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = +3
Query: 54 VEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMT 158
V + +F+++ ASPGE VG+LAAQSIGEP+TQMT
Sbjct: 977 VGAIETRFIKAAASPGEMVGVLAAQSIGEPATQMT 1011
>UniRef50_O96452 Cluster: DNA-directed RNA polymerase; n=1;
Antonospora locustae|Rep: DNA-directed RNA polymerase -
Antonospora locustae (Nosema locustae)
Length = 1553
Score = 49.6 bits (113), Expect = 8e-05
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +3
Query: 72 KFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
KF+ + S E VG LAAQSIGEP+TQMTLNTF +
Sbjct: 1015 KFVRGIISTNEMVGTLAAQSIGEPATQMTLNTFHY 1049
>UniRef50_P15354 Cluster: DNA-directed RNA polymerase subunit A'';
n=6; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit A'' - Halobacterium salinarium (Halobacterium
halobium)
Length = 397
Score = 49.6 bits (113), Expect = 8e-05
Identities = 20/38 (52%), Positives = 30/38 (78%)
Frame = +3
Query: 63 MNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+ A++L++ P +PVG ++AQSIGEP TQMT+NTF +
Sbjct: 48 VEAQYLDTRVDPLDPVGTVSAQSIGEPGTQMTMNTFHY 85
Score = 34.7 bits (76), Expect = 2.4
Identities = 20/73 (27%), Positives = 39/73 (53%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH+AG +M+VT G+PRL E+ D TP M++ +L + ++ E+ + + ++
Sbjct: 83 FHYAGVAEMDVTQGLPRLIELV-DARKTPDTPVMEV-YLE-DEYAEERERAHEVVWKIEA 139
Query: 349 ADVLEKIDVQCEI 387
+L D+ +
Sbjct: 140 TKILALGDISTNV 152
>UniRef50_Q9AVW8 Cluster: DNA-directed RNA polymerase II largest
chain; n=1; Guillardia theta|Rep: DNA-directed RNA
polymerase II largest chain - Guillardia theta
(Cryptomonas phi)
Length = 1473
Score = 49.2 bits (112), Expect = 1e-04
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = +3
Query: 81 ESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+S+ PGE VG ++AQSIG+P+TQMTLNTF F
Sbjct: 1049 KSLIQPGEMVGTISAQSIGQPATQMTLNTFHF 1080
Score = 44.4 bits (100), Expect = 0.003
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLN--VSDVTKKAEKLRQKLNRV 342
FHFAG NVTLG+PRL+EI D K+P++ I FL+ S+ +K +K+++ + V
Sbjct: 1078 FHFAGVSAKNVTLGVPRLKEI-IDIQKNIKSPSLTI-FLHKKCSNDPRKVKKIQESIESV 1135
Query: 343 TIADVLEKIDVQCEIVVXPE 402
L +I EI+ P+
Sbjct: 1136 R----LNRISNYFEIIYDPD 1151
>UniRef50_Q58446 Cluster: DNA-directed RNA polymerase subunit A''
(EC 2.7.7.6) [Contains: Mja rpoA2 intein (Mja rpol A''
intein)]; n=7; Methanococcales|Rep: DNA-directed RNA
polymerase subunit A'' (EC 2.7.7.6) [Contains: Mja rpoA2
intein (Mja rpol A'' intein)] - Methanococcus jannaschii
Length = 859
Score = 49.2 bits (112), Expect = 1e-04
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFL-NVSDVTKKAEKLRQKLNRVT 345
FH+AG ++NVTLG+PR+ EI D E TP M I D +KAE++ +++ +T
Sbjct: 551 FHYAGVAEINVTLGLPRMIEIV-DARKEPSTPIMTIYLKEEYKDNREKAEEIAKEIESLT 609
Query: 346 IADVLEKIDV 375
+ + E I +
Sbjct: 610 LGSIAESISI 619
Score = 41.9 bits (94), Expect = 0.016
Identities = 20/35 (57%), Positives = 28/35 (80%)
Frame = +3
Query: 57 EVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTL 161
EV+NA + +++ P E VG++AAQSIGEP TQM+L
Sbjct: 44 EVVNA-YRKALVEPYEAVGIVAAQSIGEPGTQMSL 77
>UniRef50_O94666 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=2; Dikarya|Rep: DNA-directed RNA polymerase III
subunit RPC1 - Schizosaccharomyces pombe (Fission yeast)
Length = 1405
Score = 49.2 bits (112), Expect = 1e-04
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +3
Query: 3 KNRSNSLYESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
K+ N + + + FV+ K++ + PG VG + AQSIGEP TQMTL TF F
Sbjct: 1012 KSVENIIRVTEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHF 1069
Score = 33.1 bits (72), Expect = 7.3
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG TLG+PR++EI N TP + +N D + A ++ ++ + +
Sbjct: 1067 FHFAGVA-AQTTLGVPRIKEIIN-AAKTISTPIITGQLINDRD-ERSARVVKGRIEKTYL 1123
Query: 349 ADVLEKID 372
DV I+
Sbjct: 1124 KDVTSYIE 1131
>UniRef50_Q4U940 Cluster: DNA-directed RNA polymerase III largest
subunit (RPC homologue), putative; n=2; Theileria|Rep:
DNA-directed RNA polymerase III largest subunit (RPC
homologue), putative - Theileria annulata
Length = 1648
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +3
Query: 48 KFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+F+ + +S+ PGE +G L +QSIGEP+TQMTL TF F
Sbjct: 1279 EFIRYSWKDYQKSLCEPGEAIGALGSQSIGEPATQMTLKTFHF 1321
Score = 47.2 bits (107), Expect = 4e-04
Identities = 25/63 (39%), Positives = 38/63 (60%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MNVTLG+PR++EI N S TP +++P L + A K++ K+ + T+
Sbjct: 1319 FHFAGVASMNVTLGVPRIQEIIN-ATSLIATPIIEVP-LEDKTSYEFALKVKSKIEKTTL 1376
Query: 349 ADV 357
+
Sbjct: 1377 GQI 1379
>UniRef50_Q8SRM3 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA polymerase
- Encephalitozoon cuniculi
Length = 1349
Score = 48.8 bits (111), Expect = 1e-04
Identities = 24/67 (35%), Positives = 41/67 (61%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MN+TLG+PRL+EI N + TP ++ + D+ + E ++ +L+R+++
Sbjct: 1045 FHFAGVASMNITLGVPRLKEIIN-AVCNISTPIINAELDDPHDLF-RTEVIKGRLDRISL 1102
Query: 349 ADVLEKI 369
DV +
Sbjct: 1103 KDVCSSL 1109
Score = 48.0 bits (109), Expect = 2e-04
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +3
Query: 51 FVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
F +++ K + + PG VG +A QSIGEP TQMTL TF F
Sbjct: 1006 FFSMVSQKMMNLIVEPGTTVGAIAGQSIGEPGTQMTLKTFHF 1047
>UniRef50_A7ARZ5 Cluster: DNA directed RNA polymerase; n=1; Babesia
bovis|Rep: DNA directed RNA polymerase - Babesia bovis
Length = 2016
Score = 48.4 bits (110), Expect = 2e-04
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = +3
Query: 75 FLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ S PGE VG +A QSIGEP+TQMTLNTF
Sbjct: 1389 YKRSQCEPGEAVGCIAGQSIGEPATQMTLNTF 1420
Score = 46.0 bits (104), Expect = 0.001
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSD--VTKKAEKLRQKLNRV 342
FH AG G NVTLGIPRL E+ TP P L SD + A+ L V
Sbjct: 1420 FHLAGHGATNVTLGIPRLVEL-MQTTGSASTPYFSAPLLGDSDDNIAHNAQLAINALRNV 1478
Query: 343 TIADVLEKIDVQ 378
+ DV+ + V+
Sbjct: 1479 PLTDVIHSVAVE 1490
>UniRef50_Q6IUR3 Cluster: DNA-directed RNA polymerase; n=3; Entamoeba
histolytica|Rep: DNA-directed RNA polymerase - Entamoeba
histolytica
Length = 1636
Score = 48.0 bits (109), Expect = 2e-04
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Frame = +3
Query: 21 LYESYTDKKKFVEVMNAK---FLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
L + + K+ F ++M+ + S +PGE VG +AAQSIG P+TQMTLNTF
Sbjct: 1047 LIQHHLSKESFDDLMDRIKNIYERSFINPGEMVGSIAAQSIGAPATQMTLNTF 1099
Score = 39.9 bits (89), Expect = 0.064
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISET-KTPNMDIPFLNVSDVTKKAEKLRQKLNRVT 345
FH AG +VT G+PRL+E+ N +S+T KTP+M++ N D + L ++LN+
Sbjct: 1099 FHHAGISSASVTEGVPRLKELLN--VSKTPKTPSMNVYLTN--DTRESMVDLDKELNKTI 1154
Query: 346 IADVLEKIDVQCEIVVXPE 402
L+ + EI P+
Sbjct: 1155 PYTKLKDLIDNVEIWFDPD 1173
>UniRef50_Q2N124 Cluster: RNA polymerase III large subunit; n=1;
Leucosolenia sp. AR-2003|Rep: RNA polymerase III large
subunit - Leucosolenia sp. AR-2003
Length = 227
Score = 48.0 bits (109), Expect = 2e-04
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +3
Query: 45 KKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNT 167
K+F +V K++ + PG VG +AAQSIGEP TQMTL T
Sbjct: 187 KEFFDVCIDKYMRARIEPGTAVGAVAAQSIGEPGTQMTLKT 227
>UniRef50_P25202 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=2; Giardia intestinalis|Rep: DNA-directed RNA
polymerase III subunit RPC1 - Giardia lamblia (Giardia
intestinalis)
Length = 1741
Score = 48.0 bits (109), Expect = 2e-04
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +3
Query: 39 DKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
D F+ + K++ PG P G +AAQS+GEPSTQMTL +F
Sbjct: 1271 DIDDFLRQVRRKYIRLNLEPGSPCGAVAAQSVGEPSTQMTLKSF 1314
Score = 35.1 bits (77), Expect = 1.8
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTP 264
FH AG MN+T G+PRL+EI D + + TP
Sbjct: 1314 FHHAGLASMNITQGVPRLKEIV-DGVVKISTP 1344
>UniRef50_Q54ZZ2 Cluster: DNA-directed RNA polymerase; n=2;
Dictyostelium discoideum|Rep: DNA-directed RNA polymerase
- Dictyostelium discoideum AX4
Length = 1450
Score = 47.6 bits (108), Expect = 3e-04
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +3
Query: 36 TDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
T + F+++ K+ + PG VG + AQSIGEP TQMTL TF F
Sbjct: 1079 TQIELFLDICLDKYSRARIEPGTAVGAIGAQSIGEPGTQMTLKTFHF 1125
Score = 40.7 bits (91), Expect = 0.036
Identities = 24/67 (35%), Positives = 34/67 (50%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MNVTLG+PR++EI N TP + LN + A + ++ + T+
Sbjct: 1123 FHFAGVASMNVTLGVPRIKEIIN-AAKNISTPIITAS-LNCDYDIRSARIVAGRIEKTTL 1180
Query: 349 ADVLEKI 369
V I
Sbjct: 1181 GHVATHI 1187
>UniRef50_Q7VJ82 Cluster: Bifunctional DNA-directed RNA polymerase
subunit beta-beta' (EC 2.7.7.6) [Includes: DNA-directed
RNA polymerase subunit beta (Transcriptase subunit beta)
(RNA polymerase subunit beta); DNA- directed RNA
polymerase subunit beta' (Transcriptase subunit beta')
(RNA polymerase beta')]; n=246; cellular organisms|Rep:
Bifunctional DNA-directed RNA polymerase subunit
beta-beta' (EC 2.7.7.6) [Includes: DNA-directed RNA
polymerase subunit beta (Transcriptase subunit beta) (RNA
polymerase subunit beta); DNA- directed RNA polymerase
subunit beta' (Transcriptase subunit beta') (RNA
polymerase beta')] - Helicobacter hepaticus
Length = 2894
Score = 47.6 bits (108), Expect = 3e-04
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
M PGE VG+LAAQSIGEP TQ+TL TF
Sbjct: 2273 MVKPGEAVGVLAAQSIGEPGTQLTLRTF 2300
>UniRef50_Q9LVH0 Cluster: DNA-directed RNA polymerase; n=11;
Euphyllophyta|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1383
Score = 46.8 bits (106), Expect = 6e-04
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +3
Query: 33 YTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
Y + + FV++ ++ E G +G + AQSIGEP TQMTL TF F
Sbjct: 1006 YINMQVFVKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHF 1053
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MN+T G+PR+ EI N TP + N ++T A ++ ++ + T+
Sbjct: 1051 FHFAGVASMNITQGVPRINEIIN-ASKNISTPVISAELENPLELT-SARWVKGRIEKTTL 1108
Query: 349 ADVLEKIDV 375
V E I+V
Sbjct: 1109 GQVAESIEV 1117
>UniRef50_Q01DV6 Cluster: DNA-directed RNA polymerase; n=15;
Eukaryota|Rep: DNA-directed RNA polymerase - Ostreococcus
tauri
Length = 1406
Score = 46.8 bits (106), Expect = 6e-04
Identities = 22/42 (52%), Positives = 26/42 (61%)
Frame = +3
Query: 51 FVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
F++V K+ PG VG + AQSIGEP TQMTL TF F
Sbjct: 1022 FLDVCMQKYNAKRIEPGTAVGAVGAQSIGEPGTQMTLKTFHF 1063
Score = 45.6 bits (103), Expect = 0.001
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MN+TLG+PR++EI N TP + ++ DV K A ++ ++ + T+
Sbjct: 1061 FHFAGVASMNITLGVPRIKEIIN-ASKSISTPIISASLMSDRDV-KAARVVKGRVEKTTL 1118
Query: 349 ADV 357
++
Sbjct: 1119 GEI 1121
>UniRef50_Q06VH1 Cluster: RNA polymerase II; n=1; Trichoplusia ni
ascovirus 2c|Rep: RNA polymerase II - Trichoplusia ni
ascovirus 2c
Length = 453
Score = 46.4 bits (105), Expect = 7e-04
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = +3
Query: 60 VMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
VMN K+ E +A+PG+ VG+ AQSIGE TQ TLNTF
Sbjct: 59 VMN-KYFEELATPGDCVGIACAQSIGECITQSTLNTF 94
>UniRef50_Q2TUP1 Cluster: DNA-directed RNA polymerase; n=8;
Spermatophyta|Rep: DNA-directed RNA polymerase - Zamia
muricata
Length = 551
Score = 46.0 bits (104), Expect = 0.001
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +3
Query: 42 KKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPS 146
+ +F+ +M K++ S+A PGE VG++A QSIGEPS
Sbjct: 517 QSRFLNLMRLKYISSLAQPGESVGVIAGQSIGEPS 551
>UniRef50_A7J5B4 Cluster: RNA polymerase II largest subunit; n=61;
Ascomycota|Rep: RNA polymerase II largest subunit -
Ramalina complanata
Length = 1015
Score = 46.0 bits (104), Expect = 0.001
Identities = 20/32 (62%), Positives = 27/32 (84%)
Frame = +3
Query: 63 MNAKFLESMASPGEPVGLLAAQSIGEPSTQMT 158
+ ++F ++ SPGE VG+LAAQSIGEP+TQMT
Sbjct: 984 IESRFNRAIVSPGEMVGVLAAQSIGEPATQMT 1015
>UniRef50_Q6F0L8 Cluster: DNA-directed RNA polymerase subunit beta';
n=5; Mollicutes|Rep: DNA-directed RNA polymerase subunit
beta' - Mesoplasma florum (Acholeplasma florum)
Length = 1254
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +3
Query: 84 SMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
S+ GEPVG++AAQSIGEP TQ+T+ TF
Sbjct: 965 SLVKIGEPVGVIAAQSIGEPGTQLTMRTF 993
>UniRef50_Q196X0 Cluster: DNA-directed RNA polymerase; n=1; Aedes
taeniorhynchus iridescent virus|Rep: DNA-directed RNA
polymerase - Aedes taeniorhynchus iridescent virus
Length = 1377
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = +3
Query: 75 FLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
F +++ SPGE VG++ AQS+GE STQ TLNTF
Sbjct: 980 FYQTLMSPGECVGIIGAQSMGEFSTQATLNTF 1011
>UniRef50_Q3SE62 Cluster: DNA-directed RNA polymerase; n=3; Paramecium
tetraurelia|Rep: DNA-directed RNA polymerase - Paramecium
tetraurelia
Length = 1368
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/40 (50%), Positives = 27/40 (67%)
Frame = +3
Query: 51 FVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
F+ +FL + +PG VG + +QSIGEP+TQMTL TF
Sbjct: 964 FIRSWMERFLTMVMAPGTSVGPITSQSIGEPATQMTLKTF 1003
Score = 39.5 bits (88), Expect = 0.084
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLN--VSDVTKKAEK 318
FH AG M++T G+PRL EI N E KTP +++ +N V D K+ K
Sbjct: 1003 FHSAGVAGMSITQGVPRLNEIIN-ASKEIKTPQINVKLINRQVMDHAKQFAK 1053
>UniRef50_Q4A369 Cluster: DNA-directed RNA polymerase; n=1; Emiliania
huxleyi virus 86|Rep: DNA-directed RNA polymerase -
Emiliania huxleyi virus 86
Length = 1468
Score = 44.8 bits (101), Expect = 0.002
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVT-KKAEKLRQKLNRVT 345
FH AG G VT+GIPRL+E+ + +TP + F SD T ++ + + KL R+T
Sbjct: 1056 FHTAGTGHAGVTMGIPRLKEVMG-YSKQLRTPQTTLEF---SDKTPEELKAISAKLTRLT 1111
Query: 346 IADVLEKIDVQCE 384
++ V E ++V E
Sbjct: 1112 LSHVTENMNVVLE 1124
Score = 43.6 bits (98), Expect = 0.005
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +3
Query: 45 KKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
K F+ + + L S+ + G+ VG AA SIGEPSTQMTLN+F
Sbjct: 1015 KAFLCEVKHRCLSSVVAGGDAVGNTAALSIGEPSTQMTLNSF 1056
>UniRef50_Q03586 Cluster: DNA-directed RNA polymerase subunit A'';
n=6; Thermoplasmatales|Rep: DNA-directed RNA polymerase
subunit A'' - Thermoplasma acidophilum
Length = 508
Score = 44.8 bits (101), Expect = 0.002
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +3
Query: 45 KKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPFCRSR 188
K ++ + + + P E VG++AAQSIGEP TQMT+ TF F R
Sbjct: 162 KNILKRIGEEIGNELIDPYEAVGIIAAQSIGEPGTQMTMRTFHFAGVR 209
Score = 40.7 bits (91), Expect = 0.036
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDI---PFLNVSD-VTKKAEKLRQKLN 336
FHFAG +MNVTLG+PRL EI D TP+M I P +D V K + +
Sbjct: 203 FHFAGVREMNVTLGLPRLIEIV-DARRIPSTPSMTIYLRPEYETNDEVVMDVVKRLENTS 261
Query: 337 RVTIADVLEKIDVQCEIVVXPE 402
+AD++ I + + V P+
Sbjct: 262 ISDVADIITDIG-ELTVTVRPD 282
>UniRef50_Q8ZYQ7 Cluster: DNA-directed RNA polymerase subunit A'';
n=5; Thermoproteaceae|Rep: DNA-directed RNA polymerase
subunit A'' - Pyrobaculum aerophilum
Length = 379
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +3
Query: 75 FLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPFCRSR 188
++ S+ PGE +G++ AQSIGEP TQM L +F + R
Sbjct: 46 YVTSLIDPGEAIGIVTAQSIGEPGTQMILRSFHYAGLR 83
Score = 35.9 bits (79), Expect = 1.0
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKK----AEKLRQKLN 336
FH+AG + ++ G+PRL E+ + +TP+ + ++ + K AE + +K+
Sbjct: 77 FHYAGLREFSMARGLPRLIEV----VDARRTPSTPLMYVYLKPPYNKSREAAESVAKKIQ 132
Query: 337 RVTIADVLEKIDV 375
+VT+ + +++DV
Sbjct: 133 QVTLETLAKEVDV 145
>UniRef50_Q2TUP4 Cluster: DNA-directed RNA polymerase; n=2; basal
Magnoliophyta|Rep: DNA-directed RNA polymerase -
Nymphaea lotus
Length = 544
Score = 43.6 bits (98), Expect = 0.005
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +3
Query: 45 KKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPS 146
KKF+ ++ K+ S+A GE VG++AAQSIGEPS
Sbjct: 511 KKFMNLVKLKYATSLAHAGEAVGVIAAQSIGEPS 544
>UniRef50_Q20EX3 Cluster: DNA-directed RNA polymerase; n=1;
Oltmannsiellopsis viridis|Rep: DNA-directed RNA
polymerase - Oltmannsiellopsis viridis (Marine
flagellate)
Length = 1859
Score = 43.6 bits (98), Expect = 0.005
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +3
Query: 84 SMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
S+ S GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 378 SLVSLGEAVGVVAAQSIGEPGTQLTMRTF 406
>UniRef50_Q0LJX1 Cluster: DNA-directed RNA polymerase, subunit
beta-prime; n=2; cellular organisms|Rep: DNA-directed RNA
polymerase, subunit beta-prime - Herpetosiphon
aurantiacus ATCC 23779
Length = 1543
Score = 43.2 bits (97), Expect = 0.007
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
M GE VG++AAQSIGEP TQ+TL TF
Sbjct: 1117 MVEIGEAVGIIAAQSIGEPGTQLTLRTF 1144
>UniRef50_Q98RN1 Cluster: DNA-directed RNA polymerase; n=1; Guillardia
theta|Rep: DNA-directed RNA polymerase - Guillardia theta
(Cryptomonas phi)
Length = 1289
Score = 43.2 bits (97), Expect = 0.007
Identities = 23/69 (33%), Positives = 38/69 (55%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FH AG G N+T GIPR+ EI ++ TK P + +N + KK +L+ L ++ I
Sbjct: 979 FHSAGTGSQNITSGIPRINEILSNS-KNTKFPLISYD-INFFEFNKKKSRLKFFLKKIKI 1036
Query: 349 ADVLEKIDV 375
++ I++
Sbjct: 1037 GFLINSIEI 1045
Score = 41.1 bits (92), Expect = 0.028
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Frame = +3
Query: 51 FVEVMNAKFLES----MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ E++ K+ ++ + PG VG ++AQS+GEP TQMTL TF
Sbjct: 936 YFEILIKKYFQTFKLVIIDPGTGVGCISAQSLGEPGTQMTLQTF 979
>UniRef50_Q8IDW5 Cluster: Putative uncharacterized protein
PF13_0203; n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PF13_0203 - Plasmodium
falciparum (isolate 3D7)
Length = 158
Score = 43.2 bits (97), Expect = 0.007
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DD E DT NND D +DD+ ++DDD+
Sbjct: 92 DDDDDDDDDESIDTTNNDNDDNDDDDDDDDDDD 124
>UniRef50_Q39KH4 Cluster: DNA-directed RNA polymerase subunit beta';
n=45; cellular organisms|Rep: DNA-directed RNA
polymerase subunit beta' - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 1414
Score = 43.2 bits (97), Expect = 0.007
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +3
Query: 84 SMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
S+ + GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 912 SLVNVGEAVGVIAAQSIGEPGTQLTMRTF 940
>UniRef50_Q7PCJ6 Cluster: DNA-directed RNA polymerase subunit
beta''; n=4; Eukaryota|Rep: DNA-directed RNA polymerase
subunit beta'' - Chlamydomonas reinhardtii
Length = 3120
Score = 43.2 bits (97), Expect = 0.007
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +3
Query: 84 SMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
++ S GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 415 NLVSVGEAVGVIAAQSIGEPGTQLTMRTF 443
>UniRef50_Q1KVX8 Cluster: DNA-directed RNA polymerase; n=1;
Scenedesmus obliquus|Rep: DNA-directed RNA polymerase -
Scenedesmus obliquus
Length = 2552
Score = 42.7 bits (96), Expect = 0.009
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ S GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 434 LVSVGEAVGVIAAQSIGEPGTQLTMRTF 461
>UniRef50_Q19VA0 Cluster: DNA-directed RNA polymerase; n=1;
Chlorokybus atmophyticus|Rep: DNA-directed RNA
polymerase - Chlorokybus atmophyticus (Soil alga)
Length = 1396
Score = 42.7 bits (96), Expect = 0.009
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +3
Query: 84 SMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
S+ GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 309 SLVDLGEAVGIIAAQSIGEPGTQLTMRTF 337
>UniRef50_Q06SF2 Cluster: DNA-directed RNA polymerase; n=1;
Stigeoclonium helveticum|Rep: DNA-directed RNA
polymerase - Stigeoclonium helveticum (Green alga)
Length = 2430
Score = 42.7 bits (96), Expect = 0.009
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ S GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 475 LVSIGEAVGIIAAQSIGEPGTQLTMRTF 502
>UniRef50_Q7MX26 Cluster: DNA-directed RNA polymerase subunit beta';
n=35; root|Rep: DNA-directed RNA polymerase subunit
beta' - Porphyromonas gingivalis (Bacteroides
gingivalis)
Length = 1433
Score = 42.7 bits (96), Expect = 0.009
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
M GE VG++AAQSIGEP TQ+TL TF
Sbjct: 909 MVQRGEVVGVIAAQSIGEPGTQLTLRTF 936
>UniRef50_O67763 Cluster: DNA-directed RNA polymerase subunit beta';
n=5; Aquificaceae|Rep: DNA-directed RNA polymerase
subunit beta' - Aquifex aeolicus
Length = 1574
Score = 42.7 bits (96), Expect = 0.009
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ S GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 1022 IVSVGEAVGIIAAQSIGEPGTQLTMRTF 1049
>UniRef50_Q9TL04 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Nephroselmis olivacea|Rep: DNA-directed RNA
polymerase subunit beta'' - Nephroselmis olivacea
Length = 1463
Score = 42.7 bits (96), Expect = 0.009
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +3
Query: 84 SMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
++ S GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 331 TIVSIGEAVGIIAAQSIGEPGTQLTMRTF 359
>UniRef50_O78483 Cluster: DNA-directed RNA polymerase subunit
beta''; n=2; Cryptomonadaceae|Rep: DNA-directed RNA
polymerase subunit beta'' - Guillardia theta
(Cryptomonas phi)
Length = 1286
Score = 42.7 bits (96), Expect = 0.009
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +3
Query: 84 SMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
S+ GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 318 SLVDLGEAVGIIAAQSIGEPGTQLTMRTF 346
>UniRef50_Q8PUR2 Cluster: DNA-directed RNA polymerase subunit A'';
n=3; Methanosarcina|Rep: DNA-directed RNA polymerase
subunit A'' - Methanosarcina mazei (Methanosarcina
frisia)
Length = 408
Score = 42.7 bits (96), Expect = 0.009
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +3
Query: 30 SYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
S + ++ +E + ++ S P + G++AAQSIGEP TQMT+ TF +
Sbjct: 36 SKKEMEEIIERVMEEYTVSCIEPCDAAGVVAAQSIGEPGTQMTMRTFHY 84
Score = 36.3 bits (80), Expect = 0.78
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDI 276
FH+AG ++NVTLG+PRL EI D TP M I
Sbjct: 82 FHYAGVAEINVTLGLPRLIEIV-DARKIPSTPMMTI 116
>UniRef50_Q110H3 Cluster: DNA-directed RNA polymerase, beta''
subunit; n=2; Oscillatoriales|Rep: DNA-directed RNA
polymerase, beta'' subunit - Trichodesmium erythraeum
(strain IMS101)
Length = 1415
Score = 42.3 bits (95), Expect = 0.012
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
M GE +G++AAQSIGEP TQ+T+ TF
Sbjct: 314 MVDMGEAIGIIAAQSIGEPGTQLTMRTF 341
>UniRef50_A6DPM8 Cluster: DNA-directed RNA polymerase subunit beta';
n=1; Lentisphaera araneosa HTCC2155|Rep: DNA-directed RNA
polymerase subunit beta' - Lentisphaera araneosa HTCC2155
Length = 1423
Score = 42.3 bits (95), Expect = 0.012
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +3
Query: 84 SMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
++A G+ VG++AAQSIGEP TQ+T+ TF
Sbjct: 940 NIAQKGDAVGIIAAQSIGEPGTQLTMRTF 968
>UniRef50_A5USR6 Cluster: DNA-directed RNA polymerase; n=4;
Chloroflexaceae|Rep: DNA-directed RNA polymerase -
Roseiflexus sp. RS-1
Length = 1504
Score = 42.3 bits (95), Expect = 0.012
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+TL TF
Sbjct: 1099 GEAVGIIAAQSIGEPGTQLTLRTF 1122
>UniRef50_Q0P3M4 Cluster: DNA-directed RNA polymerase; n=1;
Ostreococcus tauri|Rep: DNA-directed RNA polymerase -
Ostreococcus tauri
Length = 1011
Score = 42.3 bits (95), Expect = 0.012
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 81 ESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ + GE VG+LAAQSIGEP TQ+T+ TF
Sbjct: 299 QKLVQLGEAVGVLAAQSIGEPGTQLTMRTF 328
>UniRef50_A6YGE2 Cluster: DNA-directed RNA polymerase; n=1;
Leptosira terrestris|Rep: DNA-directed RNA polymerase -
Leptosira terrestris (Pleurastrum terrestre)
Length = 3576
Score = 42.3 bits (95), Expect = 0.012
Identities = 17/30 (56%), Positives = 24/30 (80%)
Frame = +3
Query: 81 ESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ + + GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 377 QGLVNLGEAVGIIAAQSIGEPGTQLTMRTF 406
>UniRef50_Q22M85 Cluster: DNA-directed RNA polymerase; n=1;
Tetrahymena thermophila SB210|Rep: DNA-directed RNA
polymerase - Tetrahymena thermophila SB210
Length = 1418
Score = 42.3 bits (95), Expect = 0.012
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +3
Query: 15 NSLYESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
N+++ + F + + ++ + + PGE VG + A SI EP+TQMTL +F F
Sbjct: 1016 NTIHITKRQINYFFKTLWERYPQMLVEPGEAVGAVGATSISEPATQMTLKSFHF 1069
Score = 41.9 bits (94), Expect = 0.016
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG MN+T G+PR++EI D + TP +D+ L +R ++ + +
Sbjct: 1067 FHFAGVASMNITQGVPRMKEI-IDAAKKISTPIIDVKLLPQFQSEHSYRSIRLQIEKTYL 1125
Query: 349 ADV 357
++
Sbjct: 1126 GEI 1128
>UniRef50_A0T0D9 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Phaeodactylum tricornutum|Rep: DNA-directed
RNA polymerase subunit beta'' - Phaeodactylum
tricornutum
Length = 1415
Score = 42.3 bits (95), Expect = 0.012
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 81 ESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
E++ GE +G+LA QSIGEP TQ+T+ TF
Sbjct: 309 ENLVDIGEAIGILAGQSIGEPGTQLTMRTF 338
>UniRef50_P23581 Cluster: DNA-directed RNA polymerase subunit
beta''; n=2; Euglena|Rep: DNA-directed RNA polymerase
subunit beta'' - Euglena gracilis
Length = 830
Score = 42.3 bits (95), Expect = 0.012
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
M GE VG+LAAQSIGEP TQ+T+ TF
Sbjct: 311 MVELGECVGILAAQSIGEPGTQLTMRTF 338
>UniRef50_Q1ACN4 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Chara vulgaris|Rep: DNA-directed RNA
polymerase subunit beta'' - Chara vulgaris (Common
stonewort)
Length = 1412
Score = 42.3 bits (95), Expect = 0.012
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+TL TF
Sbjct: 318 GEAVGIIAAQSIGEPGTQLTLRTF 341
>UniRef50_P22705 Cluster: DNA-directed RNA polymerase subunit beta';
n=7; cellular organisms|Rep: DNA-directed RNA polymerase
subunit beta' - Anabaena sp. (strain PCC 7120)
Length = 1355
Score = 42.3 bits (95), Expect = 0.012
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
M GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 313 MVDLGEAVGIIAAQSIGEPGTQLTMRTF 340
>UniRef50_Q83066 Cluster: DNA-directed RNA polymerase; n=3;
Lymphocystivirus|Rep: DNA-directed RNA polymerase - Fish
lymphocystis disease virus (FLDV)
Length = 1199
Score = 41.9 bits (94), Expect = 0.016
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +3
Query: 51 FVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ E + ++ ++ PGE VG++ AQ+IG TQ TLNTF
Sbjct: 850 WTETVRKAYVAAIIDPGEAVGIICAQAIGAKQTQQTLNTF 889
>UniRef50_A4M8H7 Cluster: DNA-directed RNA polymerase; n=1; Petrotoga
mobilis SJ95|Rep: DNA-directed RNA polymerase - Petrotoga
mobilis SJ95
Length = 1643
Score = 41.9 bits (94), Expect = 0.016
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ + GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 1259 LVNRGEAVGIIAAQSIGEPGTQLTMRTF 1286
>UniRef50_Q8LLJ6 Cluster: DNA-directed RNA polymerase; n=1; Ochromonas
danica|Rep: DNA-directed RNA polymerase - Ochromonas
danica
Length = 1064
Score = 41.9 bits (94), Expect = 0.016
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +3
Query: 75 FLESMASPGEPVGLLAAQSIGEPSTQMT 158
F S+ PGE G+LAAQSIGEP+TQMT
Sbjct: 1037 FRASVVHPGEMAGVLAAQSIGEPATQMT 1064
>UniRef50_Q3LWD4 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1329
Score = 41.9 bits (94), Expect = 0.016
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +3
Query: 93 SPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+PG P+G++A QSI EP TQMTL +F F
Sbjct: 1002 NPGYPIGIIAGQSISEPVTQMTLKSFHF 1029
>UniRef50_Q2EEX0 Cluster: DNA-directed RNA polymerase; n=1;
Helicosporidium sp. ex Simulium jonesii|Rep:
DNA-directed RNA polymerase - Helicosporidium sp. subsp.
Simulium jonesii (Green alga)
Length = 1058
Score = 41.9 bits (94), Expect = 0.016
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE +G++AAQSIGEP TQ+TL TF
Sbjct: 328 GEAIGIIAAQSIGEPGTQLTLRTF 351
>UniRef50_Q2LQ86 Cluster: DNA-directed RNA polymerase subunit beta';
n=6; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Syntrophus aciditrophicus (strain SB)
Length = 1381
Score = 41.9 bits (94), Expect = 0.016
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTFPFCRSR*HERH 203
GE VG++AAQSIGEP TQ+T+ TF + E H
Sbjct: 899 GEAVGIIAAQSIGEPGTQLTMRTFHIGGTAKFEEH 933
>UniRef50_Q8KG14 Cluster: DNA-directed RNA polymerase subunit beta';
n=11; Chlorobiaceae|Rep: DNA-directed RNA polymerase
subunit beta' - Chlorobium tepidum
Length = 1490
Score = 41.9 bits (94), Expect = 0.016
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+TL TF
Sbjct: 968 GEAVGVIAAQSIGEPGTQLTLRTF 991
>UniRef50_Q32RG2 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Zygnema circumcarinatum|Rep: DNA-directed
RNA polymerase subunit beta'' - Zygnema circumcarinatum
(Green alga)
Length = 1095
Score = 41.9 bits (94), Expect = 0.016
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
M S GE +G++A QSIGEP TQ+TL TF
Sbjct: 313 MVSLGEAIGVVAGQSIGEPGTQLTLRTF 340
>UniRef50_Q0E534 Cluster: 52.2 kDa DNA-directed RNA polymerase II
subunit 1; n=2; Ascovirus|Rep: 52.2 kDa DNA-directed RNA
polymerase II subunit 1 - Spodoptera frugiperda
ascovirus 1a
Length = 462
Score = 41.5 bits (93), Expect = 0.021
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = +3
Query: 60 VMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+++ ++L+ +A+PG+ VG+ AQ IGE TQ TLNTF
Sbjct: 64 LLHDRYLKELATPGDCVGVACAQFIGECITQSTLNTF 100
>UniRef50_A7HNY1 Cluster: DNA-directed RNA polymerase, beta' subunit;
n=3; Bacteria|Rep: DNA-directed RNA polymerase, beta'
subunit - Fervidobacterium nodosum Rt17-B1
Length = 1650
Score = 41.5 bits (93), Expect = 0.021
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 1294 GESVGIIAAQSIGEPGTQLTMRTF 1317
>UniRef50_A6PR79 Cluster: DNA-directed RNA polymerase, beta'
subunit; n=1; Victivallis vadensis ATCC BAA-548|Rep:
DNA-directed RNA polymerase, beta' subunit - Victivallis
vadensis ATCC BAA-548
Length = 1464
Score = 41.5 bits (93), Expect = 0.021
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = +3
Query: 81 ESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ +A G+ +G++AAQSIGEP TQ+T+ TF
Sbjct: 898 DRLAKEGDALGIIAAQSIGEPGTQLTMRTF 927
>UniRef50_A5Z8Z4 Cluster: DNA-directed RNA polymerase; n=2;
Bacteria|Rep: DNA-directed RNA polymerase - Eubacterium
ventriosum ATCC 27560
Length = 1270
Score = 41.5 bits (93), Expect = 0.021
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 953 GEAVGIIAAQSIGEPGTQLTMRTF 976
>UniRef50_Q82DQ4 Cluster: DNA-directed RNA polymerase subunit beta';
n=26; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Streptomyces avermitilis
Length = 1299
Score = 41.5 bits (93), Expect = 0.021
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 986 GEAVGIIAAQSIGEPGTQLTMRTF 1009
>UniRef50_Q9CK92 Cluster: DNA-directed RNA polymerase subunit beta';
n=86; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Pasteurella multocida
Length = 1417
Score = 41.5 bits (93), Expect = 0.021
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ + GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 909 LINQGEAVGVIAAQSIGEPGTQLTMRTF 936
>UniRef50_Q2RFP0 Cluster: DNA-directed RNA polymerase subunit beta';
n=12; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Moorella thermoacetica (strain ATCC 39073)
Length = 1164
Score = 41.5 bits (93), Expect = 0.021
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 874 GEAVGIIAAQSIGEPGTQLTMRTF 897
>UniRef50_Q7VKL8 Cluster: DNA-directed RNA polymerase subunit beta';
n=685; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Haemophilus ducreyi
Length = 1420
Score = 41.5 bits (93), Expect = 0.021
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ + GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 909 LINQGEAVGVIAAQSIGEPGTQLTMRTF 936
>UniRef50_Q890N5 Cluster: DNA-directed RNA polymerase subunit beta';
n=3; Clostridium|Rep: DNA-directed RNA polymerase
subunit beta' - Clostridium tetani
Length = 1135
Score = 41.5 bits (93), Expect = 0.021
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 893 GESVGIIAAQSIGEPGTQLTMRTF 916
>UniRef50_Q9Z999 Cluster: DNA-directed RNA polymerase subunit beta';
n=47; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Chlamydia pneumoniae (Chlamydophila pneumoniae)
Length = 1393
Score = 41.5 bits (93), Expect = 0.021
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 911 GEAVGIIAAQSIGEPGTQLTMRTF 934
>UniRef50_Q7VRP8 Cluster: DNA-directed RNA polymerase subunit beta';
n=16; cellular organisms|Rep: DNA-directed RNA
polymerase subunit beta' - Blochmannia floridanus
Length = 1420
Score = 41.5 bits (93), Expect = 0.021
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ + GE +G++AAQSIGEP TQ+T+ TF
Sbjct: 916 LVNKGEAIGVIAAQSIGEPGTQLTMRTF 943
>UniRef50_A0T0Q9 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Thalassiosira pseudonana|Rep: DNA-directed
RNA polymerase subunit beta'' - Thalassiosira pseudonana
(Marine diatom)
Length = 1446
Score = 41.5 bits (93), Expect = 0.021
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 81 ESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+++ GE VG+LA QSIGEP TQ+T+ TF
Sbjct: 303 QNLVDLGEAVGILAGQSIGEPGTQLTMRTF 332
>UniRef50_Q8WI26 Cluster: DNA-directed RNA polymerase subunit
beta''; n=3; Moniliformopses|Rep: DNA-directed RNA
polymerase subunit beta'' - Psilotum nudum (Whisk fern)
Length = 1408
Score = 41.5 bits (93), Expect = 0.021
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 81 ESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+++ GE VG++A QSIGEP TQ+TL TF
Sbjct: 310 QNLVELGEAVGIIAGQSIGEPGTQLTLRTF 339
>UniRef50_Q7VA30 Cluster: DNA-directed RNA polymerase subunit beta';
n=33; root|Rep: DNA-directed RNA polymerase subunit
beta' - Prochlorococcus marinus
Length = 1367
Score = 41.5 bits (93), Expect = 0.021
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 341 GEAVGIIAAQSIGEPGTQLTMRTF 364
>UniRef50_P49468 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Odontella sinensis|Rep: DNA-directed RNA
polymerase subunit beta'' - Odontella sinensis (Marine
centric diatom)
Length = 1481
Score = 41.5 bits (93), Expect = 0.021
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +3
Query: 18 SLYESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
SLY S K ++ N E++ GE +G++A QSIGEP TQ+T+ TF
Sbjct: 292 SLYRSICQKCYGWDLAN----ENLIDIGERIGIIAGQSIGEPGTQLTMRTF 338
>UniRef50_Q9MUS7 Cluster: DNA-directed RNA polymerase subunit
beta''; n=2; Eukaryota|Rep: DNA-directed RNA polymerase
subunit beta'' - Mesostigma viride
Length = 1223
Score = 41.5 bits (93), Expect = 0.021
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 331 GEAVGIIAAQSIGEPGTQLTMRTF 354
>UniRef50_Q6B8R6 Cluster: DNA-directed RNA polymerase subunit
beta''; n=3; Rhodophyta|Rep: DNA-directed RNA polymerase
subunit beta'' - Gracilaria tenuistipitata var. liui
(Red alga)
Length = 1228
Score = 41.5 bits (93), Expect = 0.021
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 320 GEAVGIIAAQSIGEPGTQLTMRTF 343
>UniRef50_P48120 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Cyanophora paradoxa|Rep: DNA-directed RNA
polymerase subunit beta'' - Cyanophora paradoxa
Length = 1265
Score = 41.5 bits (93), Expect = 0.021
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 321 GEAVGIIAAQSIGEPGTQLTMRTF 344
>UniRef50_P12465 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Chlorella vulgaris|Rep: DNA-directed RNA
polymerase subunit beta'' - Chlorella vulgaris (Green
alga)
Length = 1562
Score = 41.5 bits (93), Expect = 0.021
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 362 GEAVGIIAAQSIGEPGTQLTMRTF 385
>UniRef50_Q8MA10 Cluster: DNA-directed RNA polymerase subunit
beta''; n=2; cellular organisms|Rep: DNA-directed RNA
polymerase subunit beta'' - Chaetosphaeridium globosum
Length = 1373
Score = 41.5 bits (93), Expect = 0.021
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
M GE VG++A QSIGEP TQ+TL TF
Sbjct: 313 MVELGEAVGIIAGQSIGEPGTQLTLRTF 340
>UniRef50_Q06J19 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1595
Score = 41.1 bits (92), Expect = 0.028
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ S GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 307 LISLGEIVGVIAAQSIGEPGTQLTMRTF 334
>UniRef50_A0NE83 Cluster: ENSANGP00000031674; n=3; Diptera|Rep:
ENSANGP00000031674 - Anopheles gambiae str. PEST
Length = 980
Score = 41.1 bits (92), Expect = 0.028
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +3
Query: 576 EQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDNTAAKIRNKR 737
+Q+K R R D+DD ++A + + DLDS + + EDDD + + K+
Sbjct: 62 KQRKDRRRLDDEDDDDEEEAEDEQEPEGEDLDSEEYDEEEEDDDRRGGRKKKKK 115
>UniRef50_Q6YQW2 Cluster: DNA-directed RNA polymerase subunit beta';
n=4; Firmicutes|Rep: DNA-directed RNA polymerase subunit
beta' - Onion yellows phytoplasma
Length = 1353
Score = 41.1 bits (92), Expect = 0.028
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 1063 GEAVGVIAAQSIGEPGTQLTMRTF 1086
>UniRef50_Q4A5S8 Cluster: DNA-directed RNA polymerase subunit beta';
n=2; Mycoplasma|Rep: DNA-directed RNA polymerase subunit
beta' - Mycoplasma synoviae (strain 53)
Length = 1492
Score = 41.1 bits (92), Expect = 0.028
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 1131 GEAVGVIAAQSIGEPGTQLTMRTF 1154
>UniRef50_Q2W2I2 Cluster: DNA-directed RNA polymerase subunit beta';
n=4; Proteobacteria|Rep: DNA-directed RNA polymerase
subunit beta' - Magnetospirillum magneticum (strain AMB-1
/ ATCC 700264)
Length = 1496
Score = 41.1 bits (92), Expect = 0.028
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 1006 GEAVGVIAAQSIGEPGTQLTMRTF 1029
>UniRef50_Q5FTX8 Cluster: DNA-directed RNA polymerase subunit beta';
n=224; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 1439
Score = 41.1 bits (92), Expect = 0.028
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 960 GEAVGVIAAQSIGEPGTQLTMRTF 983
>UniRef50_Q3ZJ90 Cluster: DNA-directed RNA polymerase subunit
beta''; n=3; Viridiplantae|Rep: DNA-directed RNA
polymerase subunit beta'' - Pseudendoclonium akinetum
(Green alga)
Length = 3462
Score = 41.1 bits (92), Expect = 0.028
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE +G++AAQSIGEP TQ+T+ TF
Sbjct: 359 GEAIGIIAAQSIGEPGTQLTMRTF 382
>UniRef50_Q4G3A5 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Emiliania huxleyi|Rep: DNA-directed RNA
polymerase subunit beta'' - Emiliania huxleyi
Length = 1267
Score = 41.1 bits (92), Expect = 0.028
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 314 GEAVGIVAAQSIGEPGTQLTMRTF 337
>UniRef50_Q9TM34 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Cyanidium caldarium|Rep: DNA-directed RNA
polymerase subunit beta'' - Cyanidium caldarium
Length = 1269
Score = 41.1 bits (92), Expect = 0.028
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE +G++AAQSIGEP TQ+T+ TF
Sbjct: 325 GEAIGIIAAQSIGEPGTQLTMRTF 348
>UniRef50_A3ZLH7 Cluster: DNA-directed RNA polymerase; n=2;
Planctomycetaceae|Rep: DNA-directed RNA polymerase -
Blastopirellula marina DSM 3645
Length = 1478
Score = 40.7 bits (91), Expect = 0.036
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 84 SMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+M G VG++AAQSIGEP TQ+T+ TF
Sbjct: 897 AMVEEGMAVGIIAAQSIGEPGTQLTMRTF 925
>UniRef50_Q5SCY0 Cluster: DNA-directed RNA polymerase; n=2;
Embryophyta|Rep: DNA-directed RNA polymerase - Huperzia
lucidula (Shining clubmoss) (Lycopodium lucidulum)
Length = 1788
Score = 40.7 bits (91), Expect = 0.036
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++A QSIGEP TQ+TL TF
Sbjct: 334 GEAVGIIAGQSIGEPGTQLTLRTF 357
>UniRef50_Q019H0 Cluster: Putative p40; n=1; Ostreococcus tauri|Rep:
Putative p40 - Ostreococcus tauri
Length = 858
Score = 40.7 bits (91), Expect = 0.036
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 531 VRKHAKATCGVMWASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
+ KHAK S++K + D+DD DD + D ++D D DD+ ++DDD+
Sbjct: 599 IEKHAKGDVTHATTSKEKSKPHDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 658
>UniRef50_A7QYV9 Cluster: Chromosome chr6 scaffold_256, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr6 scaffold_256, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 338
Score = 40.7 bits (91), Expect = 0.036
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++A QSIGEP TQ+TL TF
Sbjct: 147 GEAVGIIAGQSIGEPGTQLTLRTF 170
>UniRef50_A2G2I8 Cluster: Mitotic apparatus protein, putative; n=1;
Trichomonas vaginalis G3|Rep: Mitotic apparatus protein,
putative - Trichomonas vaginalis G3
Length = 155
Score = 40.7 bits (91), Expect = 0.036
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +3
Query: 576 EQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDNTAAKIRNKR 737
EQ+ +RA + +D+ DDA E D A+ D D D+E ++DDD K R R
Sbjct: 77 EQEMKRATSKLGSDDEDDDADEDAD-ADEDGDEDDEEGFDDDDDEPKKKSRRGR 129
>UniRef50_Q9BHM4 Cluster: DNA-directed RNA polymerase; n=1;
Pleistophora sp. LS|Rep: DNA-directed RNA polymerase -
Pleistophora sp. LS
Length = 897
Score = 40.7 bits (91), Expect = 0.036
Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = +3
Query: 48 KFVE-VMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTL 161
K+++ ++ K ++ +P E VG LAAQSIGEP+TQMTL
Sbjct: 859 KYIQCILLKKIKKARINPMEMVGTLAAQSIGEPATQMTL 897
>UniRef50_P36252 Cluster: DNA-directed RNA polymerase subunit beta';
n=2; Thermotoga|Rep: DNA-directed RNA polymerase subunit
beta' - Thermotoga maritima
Length = 1690
Score = 40.7 bits (91), Expect = 0.036
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 1319 GEAVGVVAAQSIGEPGTQLTMRTF 1342
>UniRef50_Q8RHI7 Cluster: DNA-directed RNA polymerase subunit beta';
n=4; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Fusobacterium nucleatum subsp. nucleatum
Length = 1319
Score = 40.7 bits (91), Expect = 0.036
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+T+ TF
Sbjct: 870 GEAVGVVAAQSIGEPGTQLTMRTF 893
>UniRef50_P41606 Cluster: DNA-directed RNA polymerase subunit
beta''; n=2; Pinus|Rep: DNA-directed RNA polymerase
subunit beta'' - Pinus thunbergii (Green pine) (Japanese
black pine)
Length = 1224
Score = 40.7 bits (91), Expect = 0.036
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++A QSIGEP TQ+TL TF
Sbjct: 332 GEAVGIIAGQSIGEPGTQLTLRTF 355
>UniRef50_P60290 Cluster: DNA-directed RNA polymerase subunit
beta''; n=3; Physcomitrella patens|Rep: DNA-directed RNA
polymerase subunit beta'' - Physcomitrella patens (Moss)
Length = 1330
Score = 40.7 bits (91), Expect = 0.036
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++A QSIGEP TQ+TL TF
Sbjct: 306 GEAVGIIAGQSIGEPGTQLTLRTF 329
>UniRef50_P06274 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Marchantia polymorpha|Rep: DNA-directed RNA
polymerase subunit beta'' - Marchantia polymorpha
(Liverwort)
Length = 1386
Score = 40.7 bits (91), Expect = 0.036
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++A QSIGEP TQ+TL TF
Sbjct: 313 GEAVGIIAGQSIGEPGTQLTLRTF 336
>UniRef50_P16025 Cluster: DNA-directed RNA polymerase subunit
beta''; n=372; Spermatophyta|Rep: DNA-directed RNA
polymerase subunit beta'' - Zea mays (Maize)
Length = 1527
Score = 40.7 bits (91), Expect = 0.036
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++A QSIGEP TQ+TL TF
Sbjct: 320 GEAVGIIAGQSIGEPGTQLTLRTF 343
>UniRef50_P56764 Cluster: DNA-directed RNA polymerase subunit
beta''; n=126; Eukaryota|Rep: DNA-directed RNA
polymerase subunit beta'' - Arabidopsis thaliana
(Mouse-ear cress)
Length = 1376
Score = 40.7 bits (91), Expect = 0.036
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++A QSIGEP TQ+TL TF
Sbjct: 317 GEAVGIIAGQSIGEPGTQLTLRTF 340
>UniRef50_Q85C71 Cluster: DNA-directed RNA polymerase subunit
beta''; n=2; Anthoceros|Rep: DNA-directed RNA polymerase
subunit beta'' - Anthoceros formosae (Hornwort)
Length = 1445
Score = 40.7 bits (91), Expect = 0.036
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++A QSIGEP TQ+TL TF
Sbjct: 318 GEAVGIIAGQSIGEPGTQLTLRTF 341
>UniRef50_P60289 Cluster: DNA-directed RNA polymerase subunit
beta''; n=24; Spermatophyta|Rep: DNA-directed RNA
polymerase subunit beta'' - Amborella trichopoda
Length = 1373
Score = 40.7 bits (91), Expect = 0.036
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++A QSIGEP TQ+TL TF
Sbjct: 320 GEAVGIIAGQSIGEPGTQLTLRTF 343
>UniRef50_Q85FM9 Cluster: DNA-directed RNA polymerase subunit
beta''; n=2; Adiantum capillus-veneris|Rep: DNA-directed
RNA polymerase subunit beta'' - Adiantum
capillus-veneris (Maidenhair fern)
Length = 1420
Score = 40.7 bits (91), Expect = 0.036
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++A QSIGEP TQ+TL TF
Sbjct: 319 GEAVGIIAGQSIGEPGTQLTLRTF 342
>UniRef50_UPI0000ECBC5B Cluster: UPI0000ECBC5B related cluster; n=2;
Gallus gallus|Rep: UPI0000ECBC5B UniRef100 entry -
Gallus gallus
Length = 522
Score = 40.3 bits (90), Expect = 0.048
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 57 EVMNAKFLESMASPGEPVGLLAAQSIGEPS 146
+++ K+ S+ PGE VGLLAAQSIGEPS
Sbjct: 493 DLLYLKWQRSLCDPGEAVGLLAAQSIGEPS 522
>UniRef50_Q00Z17 Cluster: Chromosome 11 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 11 contig 1, DNA
sequence - Ostreococcus tauri
Length = 524
Score = 40.3 bits (90), Expect = 0.048
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 558 GVMWASEQKKQRARAAKSDEDD-GDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
G+ + ++K ++ + DEDD GDD E D ++D D DD+ ++DDD+
Sbjct: 427 GIKFYKDKKAKKTKDDDDDEDDDGDDKEEDDDDDDDDGDDDDDDDGDDDDDD 478
>UniRef50_A7P7C3 Cluster: Chromosome chr9 scaffold_7, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr9 scaffold_7, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 692
Score = 40.3 bits (90), Expect = 0.048
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++A QSIGEP TQ+TL TF
Sbjct: 622 GEVVGIIAGQSIGEPGTQLTLRTF 645
>UniRef50_Q16QI0 Cluster: Ribosomal RNA small subunit
methyltransferase b; n=1; Aedes aegypti|Rep: Ribosomal
RNA small subunit methyltransferase b - Aedes aegypti
(Yellowfever mosquito)
Length = 812
Score = 40.3 bits (90), Expect = 0.048
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 537 KHAKATCGVMWASEQKKQRARAAKSDEDDGDDAPE-PTDTANNDLDSSDDEAPNEDDDNT 713
K+AKAT V+ + KK + A + +DDG E P + D+ +SDD++ +D+
Sbjct: 114 KYAKATSNVIQPAVSKKNQYEAEEESDDDGSSEDEAPGNKRGRDILASDDDSDMSEDNEP 173
Query: 714 AAKI 725
K+
Sbjct: 174 RTKV 177
>UniRef50_Q9BHJ4 Cluster: DNA-directed RNA polymerase; n=2;
Trachipleistophora|Rep: DNA-directed RNA polymerase -
Trachipleistophora hominis
Length = 1056
Score = 40.3 bits (90), Expect = 0.048
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +3
Query: 60 VMNAKFLESMASPGEPVGLLAAQSIGEPSTQMT 158
V+ K+ ++ PGE VG LA+QSIGE +TQMT
Sbjct: 1023 VIREKYYRALVCPGEMVGTLASQSIGEHATQMT 1055
>UniRef50_Q73JJ8 Cluster: DNA-directed RNA polymerase subunit beta';
n=10; Spirochaetales|Rep: DNA-directed RNA polymerase
subunit beta' - Treponema denticola
Length = 1424
Score = 40.3 bits (90), Expect = 0.048
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIG+P TQ+T+ TF
Sbjct: 881 GEAVGIIAAQSIGQPGTQLTMRTF 904
>UniRef50_Q8R7U7 Cluster: DNA-directed RNA polymerase subunit beta';
n=22; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Thermoanaerobacter tengcongensis
Length = 1183
Score = 40.3 bits (90), Expect = 0.048
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQ+IGEP TQ+T+ TF
Sbjct: 891 GEAVGIIAAQAIGEPGTQLTMRTF 914
>UniRef50_Q97NQ8 Cluster: DNA-directed RNA polymerase subunit beta';
n=134; Firmicutes|Rep: DNA-directed RNA polymerase
subunit beta' - Streptococcus pneumoniae
Length = 1225
Score = 40.3 bits (90), Expect = 0.048
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG +AAQSIGEP TQ+T+ TF
Sbjct: 916 GEAVGTIAAQSIGEPGTQLTMRTF 939
>UniRef50_Q9RVW0 Cluster: DNA-directed RNA polymerase subunit beta';
n=9; Deinococci|Rep: DNA-directed RNA polymerase subunit
beta' - Deinococcus radiodurans
Length = 1546
Score = 40.3 bits (90), Expect = 0.048
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +3
Query: 93 SPGEPVGLLAAQSIGEPSTQMTLNTF 170
S GE VG++AA+SIGEP TQ+T+ TF
Sbjct: 1233 SMGEAVGVVAAESIGEPGTQLTMRTF 1258
>UniRef50_Q8G515 Cluster: DNA-directed RNA polymerase subunit beta';
n=68; Actinobacteridae|Rep: DNA-directed RNA polymerase
subunit beta' - Bifidobacterium longum
Length = 1345
Score = 40.3 bits (90), Expect = 0.048
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG++AAQSIGEP TQ+TL +F
Sbjct: 998 GETVGIVAAQSIGEPGTQLTLRSF 1021
>UniRef50_Q3LWH2 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1359
Score = 39.9 bits (89), Expect = 0.064
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +3
Query: 105 PVGLLAAQSIGEPSTQMTLNTF 170
P+G+L QSIGEP TQMTLNTF
Sbjct: 1018 PLGVLCGQSIGEPLTQMTLNTF 1039
>UniRef50_Q9BHM2 Cluster: DNA-directed RNA polymerase; n=5;
Pleistophoridae|Rep: DNA-directed RNA polymerase -
Pleistophora typicalis
Length = 1117
Score = 39.9 bits (89), Expect = 0.064
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 60 VMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTL 161
++ + S+ + GE VG LA+QSIGEP+TQMTL
Sbjct: 1084 LIKGAYHRSLVNVGEMVGTLASQSIGEPATQMTL 1117
>UniRef50_P95405 Cluster: DNA-directed RNA polymerase subunit beta';
n=23; Lactobacillales|Rep: DNA-directed RNA polymerase
subunit beta' - Oenococcus oeni (Leuconostoc oenos)
Length = 1004
Score = 39.9 bits (89), Expect = 0.064
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
GE VG +AAQSIGEP TQ+T+ TF
Sbjct: 855 GEAVGTVAAQSIGEPGTQLTMRTF 878
>UniRef50_Q98Q24 Cluster: DNA-directed RNA polymerase subunit beta';
n=5; Mycoplasma|Rep: DNA-directed RNA polymerase subunit
beta' - Mycoplasma pulmonis
Length = 1426
Score = 39.9 bits (89), Expect = 0.064
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ S GE VG+ A+QSIGEP TQ+T+ TF
Sbjct: 1105 IVSIGEAVGITASQSIGEPGTQLTMRTF 1132
>UniRef50_Q01GY9 Cluster: Chromosome 01 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 01 contig 1, DNA
sequence - Ostreococcus tauri
Length = 416
Score = 39.5 bits (88), Expect = 0.084
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 570 ASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
A +++ + A SD+DD DD + D ++D D DD+ ++DDD+
Sbjct: 138 AEDEEDEADEEASSDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 184
Score = 37.1 bits (82), Expect = 0.45
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 576 EQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
E+ + A+ D+DD DD + D ++D D DD+ ++DDD+
Sbjct: 141 EEDEADEEASSDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 185
Score = 36.3 bits (80), Expect = 0.78
Identities = 15/68 (22%), Positives = 35/68 (51%)
Frame = +3
Query: 507 IFDEMFTVVRKHAKATCGVMWASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDE 686
+ +E+ + + +++ ++ + A + D+DD DD + D ++D D DD+
Sbjct: 120 VMEELASGLASESESESDAEDEEDEADEEASSDDDDDDDDDDDDDDDDDDDDDDDDDDDD 179
Query: 687 APNEDDDN 710
++DDD+
Sbjct: 180 DDDDDDDD 187
Score = 33.9 bits (74), Expect = 4.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DD + D ++D D DD+ ++DDD+
Sbjct: 156 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 188
Score = 33.5 bits (73), Expect = 5.5
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +3
Query: 570 ASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
AS QK QR+ AK + D DD+ +D++ +D DSS+ + + DD+
Sbjct: 371 ASAQKSQRS--AKETQGD-DDSESESDSSESDSDSSESDEEEDRDDS 414
>UniRef50_A6SHP4 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 1607
Score = 39.5 bits (88), Expect = 0.084
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +3
Query: 573 SEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSD--DEAPNEDDDNTAA 719
S QK Q RA + E+D +D + + AN+D D+ D D P++D+DN ++
Sbjct: 436 STQKLQARRAQQDSEEDTEDDDDEDEDANDDSDNVDNVDSDPSDDEDNMSS 486
>UniRef50_A3KNR8 Cluster: Si:ch211-240j22.5 protein; n=4; Danio
rerio|Rep: Si:ch211-240j22.5 protein - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 347
Score = 39.1 bits (87), Expect = 0.11
Identities = 16/54 (29%), Positives = 34/54 (62%)
Frame = +3
Query: 573 SEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDNTAAKIRNK 734
S +K+++++ K ++DD D P+ T + +D D +++E +ED+ T K ++K
Sbjct: 175 SSEKRRKSQEEKRNKDDDDYQPQNTPDSESDADFTEEEENDEDETFTVKKKKDK 228
>UniRef50_Q8KTP7 Cluster: DNA-directed RNA polymerase; n=1;
Candidatus Tremblaya princeps|Rep: DNA-directed RNA
polymerase - Tremblaya princeps
Length = 1319
Score = 39.1 bits (87), Expect = 0.11
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 84 SMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
S + G VG++AAQSIGEP TQ+T+ TF
Sbjct: 895 SRVNMGAAVGVVAAQSIGEPGTQLTMRTF 923
>UniRef50_O77320 Cluster: Putative uncharacterized protein MAL3P3.3;
n=3; Plasmodium|Rep: Putative uncharacterized protein
MAL3P3.3 - Plasmodium falciparum (isolate 3D7)
Length = 3724
Score = 39.1 bits (87), Expect = 0.11
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 576 EQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSD-DEAPNEDDDN 710
EQ+++ + + DEDD DD E + +ND D D D+ N+DDD+
Sbjct: 1661 EQEEEDEQEEEDDEDDEDDEEEDDEDDDNDNDDDDEDDNDNDDDDD 1706
Score = 35.9 bits (79), Expect = 1.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 576 EQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDD 707
E+ +Q + DEDD ++ E D N+D D D++ ++DDD
Sbjct: 1664 EEDEQEEEDDEDDEDDEEEDDEDDDNDNDDDDEDDNDNDDDDDD 1707
Score = 33.1 bits (72), Expect = 7.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 576 EQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
EQ +Q + +ED+ ++ E + + D D D+E +EDDDN
Sbjct: 1646 EQDEQEEEDEQEEEDEQEEEDEQEEEDDED-DEDDEEEDDEDDDN 1689
Score = 32.7 bits (71), Expect = 9.7
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 576 EQKKQRARAAKSDEDDGDDA-PEPTDTANNDLDSSDDEAPNEDDDN 710
E+ +Q + +EDD DD E D ++D D+ DD+ + D+D+
Sbjct: 1658 EEDEQEEEDEQEEEDDEDDEDDEEEDDEDDDNDNDDDDEDDNDNDD 1703
>UniRef50_A5K5Y1 Cluster: RAD protein; n=1; Plasmodium vivax|Rep:
RAD protein - Plasmodium vivax
Length = 460
Score = 39.1 bits (87), Expect = 0.11
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 558 GVMWASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDD 707
G S +K+Q+ + + DED DD E D D D S++E +EDD+
Sbjct: 144 GAASCSVKKEQQKKTQRDDEDYDDDEEEEEDDEEEDDDESNEEESHEDDE 193
>UniRef50_Q9BHZ7 Cluster: DNA-directed RNA polymerase; n=2;
Glugeidae|Rep: DNA-directed RNA polymerase - Loma
acerinae
Length = 894
Score = 39.1 bits (87), Expect = 0.11
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = +3
Query: 30 SYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTL 161
S + + ++ + +++ ++ E VG LA+QSIGEP+TQMTL
Sbjct: 851 SLNELTELIQKVKSRYRAALCPMNEMVGTLASQSIGEPATQMTL 894
>UniRef50_P13816 Cluster: Glutamic acid-rich protein precursor; n=3;
Plasmodium falciparum|Rep: Glutamic acid-rich protein
precursor - Plasmodium falciparum (isolate FC27 / Papua
New Guinea)
Length = 678
Score = 39.1 bits (87), Expect = 0.11
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 576 EQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDD 707
E++++ DE+D DDA E D A D D ++++ EDDD
Sbjct: 596 EEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDD 639
Score = 34.7 bits (76), Expect = 2.4
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +3
Query: 576 EQKKQRARAAKSDEDDG----DDAPEPTDTANNDLDSSDDEAPNEDDD 707
E++++ + DEDD DDA E D A D D DD+ ++D+D
Sbjct: 599 EEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDED 646
>UniRef50_UPI0000F214E8 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 151
Score = 38.7 bits (86), Expect = 0.15
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+D+GDD + D N+D D DD+ +EDD N
Sbjct: 71 DKDNGDDVCDANDDGNDDEDDDDDDGNDEDDGN 103
Score = 35.5 bits (78), Expect = 1.4
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+D+GDD + D N+D D+SDD+ ++DD N
Sbjct: 13 DKDNGDDVCDANDDGNDDEDNSDDD-DDDDDGN 44
Score = 35.5 bits (78), Expect = 1.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 609 SDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
SD+DD DD D N+D D+ DD DDD+
Sbjct: 34 SDDDDDDDDGNDEDDGNDDKDNGDDVCDANDDDD 67
Score = 34.3 bits (75), Expect = 3.2
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
DEDD DD D N+D D+ DD DD N
Sbjct: 88 DEDDDDDDGNDEDDGNDDKDNGDDVCDANDDGN 120
>UniRef50_Q8I1X1 Cluster: Lysine decarboxylase, putative; n=1;
Plasmodium falciparum 3D7|Rep: Lysine decarboxylase,
putative - Plasmodium falciparum (isolate 3D7)
Length = 2415
Score = 38.7 bits (86), Expect = 0.15
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DD D NND D+++D+ N DDDN
Sbjct: 994 DDDDNDDDNNNDDNNNNDDDNNNDDDNNNDDDN 1026
Score = 34.3 bits (75), Expect = 3.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+++ DD D NND D+++D+ N DDDN
Sbjct: 1000 DDNNNDDNNNNDDDNNNDDDNNNDDDNNNDDDN 1032
>UniRef50_Q176R3 Cluster: Fruitless; n=1; Aedes aegypti|Rep:
Fruitless - Aedes aegypti (Yellowfever mosquito)
Length = 552
Score = 38.7 bits (86), Expect = 0.15
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +3
Query: 567 WASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
+A+E +K RA ++ D DG D+ PT NN+ +S++ N +++N
Sbjct: 121 YATESEKSRAERSRVDSRDGRDSAPPTSVTNNNTINSNNNNTNNNNNN 168
>UniRef50_O21238 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase -
Reclinomonas americana
Length = 1384
Score = 38.7 bits (86), Expect = 0.15
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +3
Query: 102 EPVGLLAAQSIGEPSTQMTLNTF 170
E +G++AAQSIGEP TQ+T+ TF
Sbjct: 915 ESIGIIAAQSIGEPGTQLTMRTF 937
>UniRef50_Q6BRI6 Cluster: Similar to CA5675|CaSIS2 Candida albicans
CaSIS2; n=1; Debaryomyces hansenii|Rep: Similar to
CA5675|CaSIS2 Candida albicans CaSIS2 - Debaryomyces
hansenii (Yeast) (Torulaspora hansenii)
Length = 559
Score = 38.7 bits (86), Expect = 0.15
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 576 EQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
E+KK A D+DD DD + D ++D D DD+ ++DDD+
Sbjct: 471 EEKKDDNEEAIMDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 515
Score = 38.3 bits (85), Expect = 0.19
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 576 EQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
E+K A D+DD DD + D ++D D DD+ ++DDD+
Sbjct: 472 EKKDDNEEAIMDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 516
Score = 37.9 bits (84), Expect = 0.26
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDNTAAK 722
D+DD DD + D ++D D DD+ N+ DDNT K
Sbjct: 500 DDDDDDDDDDDDDDDDDDDDDDDDDDDNDGDDNTENK 536
Score = 35.9 bits (79), Expect = 1.0
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DD + D ++D D DD+ ++DDDN
Sbjct: 495 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDN 527
Score = 33.9 bits (74), Expect = 4.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DD + D ++D D DD+ ++DDD+
Sbjct: 487 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 519
Score = 33.9 bits (74), Expect = 4.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DD + D ++D D DD+ ++DDD+
Sbjct: 488 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 520
Score = 33.9 bits (74), Expect = 4.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DD + D ++D D DD+ ++DDD+
Sbjct: 489 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 521
Score = 33.9 bits (74), Expect = 4.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DD + D ++D D DD+ ++DDD+
Sbjct: 490 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 522
Score = 33.9 bits (74), Expect = 4.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DD + D ++D D DD+ ++DDD+
Sbjct: 491 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 523
Score = 33.9 bits (74), Expect = 4.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DD + D ++D D DD+ ++DDD+
Sbjct: 492 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 524
Score = 33.9 bits (74), Expect = 4.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DD + D ++D D DD+ ++DDD+
Sbjct: 493 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 525
Score = 33.9 bits (74), Expect = 4.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DD + D ++D D DD+ ++DDD+
Sbjct: 494 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 526
Score = 33.5 bits (73), Expect = 5.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDNTAAKIRNK 734
D+DD DD + D ++D D DD+ ++DD++ NK
Sbjct: 496 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDNDGDDNTENK 536
>UniRef50_P47582 Cluster: DNA-directed RNA polymerase subunit beta';
n=8; Mycoplasma|Rep: DNA-directed RNA polymerase subunit
beta' - Mycoplasma genitalium
Length = 1292
Score = 38.7 bits (86), Expect = 0.15
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
G VG++AAQSIGEP TQ+T+ TF
Sbjct: 1011 GTAVGVIAAQSIGEPGTQLTMRTF 1034
>UniRef50_Q6YHB9 Cluster: DNA-directed RNA polymerase; n=5;
Ranavirus|Rep: DNA-directed RNA polymerase - Ambystoma
tigrinum stebbensi virus
Length = 1294
Score = 38.3 bits (85), Expect = 0.19
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +3
Query: 75 FLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+ ++ PGE VG+L AQSIG TQ TL+TF
Sbjct: 934 YAAAVLCPGEAVGVLCAQSIGAKQTQQTLDTF 965
>UniRef50_A5CTW5 Cluster: Putative uncharacterized protein; n=1;
Clavibacter michiganensis subsp. michiganensis NCPPB
382|Rep: Putative uncharacterized protein - Clavibacter
michiganensis subsp. michiganensis (strain NCPPB 382)
Length = 221
Score = 38.3 bits (85), Expect = 0.19
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 558 GVMWASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
G+ E ++ A + D+D+ DD E + A++ LD D EAP DDD+
Sbjct: 154 GIEADQEAERLAAESDDEDQDEDDDPAEDAEDADDVLDGVDFEAPASDDDD 204
>UniRef50_Q7RIE7 Cluster: Putative uncharacterized protein PY03677;
n=1; Plasmodium yoelii yoelii|Rep: Putative
uncharacterized protein PY03677 - Plasmodium yoelii
yoelii
Length = 831
Score = 38.3 bits (85), Expect = 0.19
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 573 SEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
+ ++K + R K DEDD +DA E + + D + D+E EDD++
Sbjct: 758 NSERKIKKRKIKDDEDDEEDAEEDDEEDDEDDEEEDEEDDEEDDED 803
>UniRef50_Q76K52 Cluster: Shell matrix protein; n=1; Pinctada
fucata|Rep: Shell matrix protein - Pinctada fucata
(Pearl oyster)
Length = 413
Score = 38.3 bits (85), Expect = 0.19
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 603 AKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
A +D DDGDD + D + D DS DD+ +DDD+
Sbjct: 73 ADADNDDGDDDDDDDDDDSGDDDSGDDDDSGDDDDS 108
Score = 37.5 bits (83), Expect = 0.34
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 609 SDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
S +DDGDD + D+ ++D D DD+ + DDD+
Sbjct: 361 SGDDDGDDGDDDADSGDDDDDDDDDDGDDGDDDS 394
Score = 35.9 bits (79), Expect = 1.0
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDD 707
D+DDGDD + D+ ++D D SDD+ ++DDD
Sbjct: 383 DDDDGDDGDD--DSGDDDGDDSDDDDDDDDDD 412
Score = 35.1 bits (77), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+D GDD D+ ++D D DD+A + DDD+
Sbjct: 348 DDDSGDDDSGDDDSGDDDGDDGDDDADSGDDDD 380
Score = 34.7 bits (76), Expect = 2.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DD D + +D DS DD+ +DDD+
Sbjct: 82 DDDDDDDDDSGDDDSGDDDDSGDDDDSGDDDDS 114
Score = 34.7 bits (76), Expect = 2.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+D GDD D + +D DS DD+ +DDD+
Sbjct: 88 DDDSGDDDSGDDDDSGDDDDSGDDDDSGDDDDS 120
Score = 34.7 bits (76), Expect = 2.4
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 609 SDEDDGDDAPEPTDTANNDLDSSDDEAPNEDD 704
S +DDGDD D + +D DS DD++ ++DD
Sbjct: 192 SGDDDGDDDDSGDDDSGDDDDSGDDDSGDDDD 223
Score = 33.1 bits (72), Expect = 7.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+D GDD + D + D DS DD++ ++D D+
Sbjct: 336 DDDSGDDDSDSGDDDSGDDDSGDDDSGDDDGDD 368
Score = 32.7 bits (71), Expect = 9.7
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNED--DDNT 713
D+D GDD D+ ++D DS DD++ ++D DD++
Sbjct: 326 DDDSGDDDSGDDDSGDDDSDSGDDDSGDDDSGDDDS 361
Score = 32.7 bits (71), Expect = 9.7
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 612 DEDDGDD--APEPTDTANNDLDSSDDEAPNEDDD 707
D+D GDD + D ++D DS DD+ ++DDD
Sbjct: 353 DDDSGDDDSGDDDGDDGDDDADSGDDDDDDDDDD 386
>UniRef50_Q23EG5 Cluster: Papain family cysteine protease containing
protein; n=3; Tetrahymena thermophila SB210|Rep: Papain
family cysteine protease containing protein -
Tetrahymena thermophila SB210
Length = 429
Score = 38.3 bits (85), Expect = 0.19
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 606 KSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDD 707
++D DD DD + D+ ++D DS DD+ +EDDD
Sbjct: 361 EADSDDEDDEDDDEDSEDDDEDSEDDDEDSEDDD 394
>UniRef50_O97291 Cluster: Putative uncharacterized protein MAL3P7.21;
n=4; Plasmodium|Rep: Putative uncharacterized protein
MAL3P7.21 - Plasmodium falciparum (isolate 3D7)
Length = 1946
Score = 38.3 bits (85), Expect = 0.19
Identities = 17/46 (36%), Positives = 30/46 (65%)
Frame = +3
Query: 573 SEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
+++KK + K+D+DD +D + D N+D D++DD N+D+DN
Sbjct: 901 NKEKKIKNNKNKNDDDDDNDDDDDNDD-NDDNDNNDDNDNNDDNDN 945
Score = 34.7 bits (76), Expect = 2.4
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANN-DLDSSDDEAPNEDDDN 710
D DD DD + D NN D D++DD N+D+DN
Sbjct: 918 DNDDDDDNDDNDDNDNNDDNDNNDDNDNNDDNDN 951
>UniRef50_A5KC27 Cluster: Putative uncharacterized protein; n=3;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 801
Score = 38.3 bits (85), Expect = 0.19
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 609 SDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
+DEDD D+ E D ++D D+ DD+ N+DDD+
Sbjct: 753 NDEDDNDEDDEDDDNDDDDDDNDDDDDDNDDDDD 786
Score = 37.5 bits (83), Expect = 0.34
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 513 DEMFTVVRKHAKATCGVMWASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAP 692
DE + K + G +++++ + DE++ D+ + D +ND D DD+
Sbjct: 709 DEGVSKGGKRRRGEAGKAEGEDEEEEDDYEEEDDEEEEDEDEDDNDEDDNDEDDEDDDND 768
Query: 693 NEDDDN 710
++DDDN
Sbjct: 769 DDDDDN 774
Score = 35.9 bits (79), Expect = 1.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
DEDD D+ D ++D D DD+ ++DDDN
Sbjct: 749 DEDDNDEDDNDEDDEDDDNDDDDDDNDDDDDDN 781
Score = 35.5 bits (78), Expect = 1.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
++DD DD + D ++D D DD+ ++DDDN
Sbjct: 763 EDDDNDDDDDDNDDDDDDNDDDDDDNDDDDDDN 795
Score = 34.7 bits (76), Expect = 2.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 609 SDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDD 707
+D+DD D+ + D ++D D+ DD+ N+DDD
Sbjct: 767 NDDDDDDNDDDDDDNDDDDDDNDDDDDDNDDDD 799
Score = 34.3 bits (75), Expect = 3.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 606 KSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
+ DED+ D+ + D + D D+ DD+ N+DDD+
Sbjct: 745 EEDEDEDDNDEDDNDEDDEDDDNDDDDDDNDDDDD 779
Score = 33.9 bits (74), Expect = 4.2
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 609 SDEDDGDDAPEPTDTANNDLD--SSDDEAPNEDDDN 710
+DEDD DD + D N+D D + DD+ N+DDD+
Sbjct: 758 NDEDDEDDDNDDDDDDNDDDDDDNDDDDDDNDDDDD 793
>UniRef50_Q6CGN4 Cluster: Similarity; n=4; Eukaryota|Rep: Similarity -
Yarrowia lipolytica (Candida lipolytica)
Length = 1268
Score = 38.3 bits (85), Expect = 0.19
Identities = 17/53 (32%), Positives = 33/53 (62%)
Frame = +3
Query: 570 ASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDNTAAKIR 728
AS++K ++ + SD DD DD+ + D++++ DS D + ++ D+ AAK +
Sbjct: 1194 ASQKKTEKEEESDSD-DDSDDSDDSDDSSDDSDDSDDSDDSDDSDEQPAAKTK 1245
>UniRef50_Q5B7C9 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized protein
- Emericella nidulans (Aspergillus nidulans)
Length = 1124
Score = 38.3 bits (85), Expect = 0.19
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
DEDD DD + D N D D+ DD+ NEDDDN
Sbjct: 1016 DEDDDDDDDDEDDDDNEDDDNEDDD--NEDDDN 1046
Score = 35.5 bits (78), Expect = 1.4
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
DEDD DD + + ++D D DD+ NEDDDN
Sbjct: 1005 DEDDDDDEDDDDEDDDDDDDDEDDD-DNEDDDN 1036
Score = 35.5 bits (78), Expect = 1.4
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 606 KSDEDDGDDAPEPTDTANNDLDSSDDE-APNEDDDN 710
+ D+DD DD E D ++D D D+E NEDDDN
Sbjct: 1006 EDDDDDEDDDDEDDDDDDDDEDDDDNEDDDNEDDDN 1041
Score = 34.3 bits (75), Expect = 3.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDD 707
DEDD D+ + ++ + D D DDE +EDDD
Sbjct: 1061 DEDDDDNEDDDSEDDDEDDDEDDDEDDDEDDD 1092
Score = 33.9 bits (74), Expect = 4.2
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDD 707
D+DD DD E D +D DDE +EDDD
Sbjct: 1053 DDDDEDDDDEDDDDNEDDDSEDDDEDDDEDDD 1084
Score = 33.9 bits (74), Expect = 4.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 609 SDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
S++DD DD + + + D D DDE +EDDD+
Sbjct: 1072 SEDDDEDDDEDDDEDDDEDDDEDDDEDDDEDDDD 1105
Score = 33.1 bits (72), Expect = 7.3
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 585 KQRARAAKSDEDDGD--DAPEPTDTANNDLDSSDDEAPNEDDDN 710
++ + SD +DG+ D E D N D D DDE +++DD+
Sbjct: 977 EENSNPESSDPEDGEESDCDEDEDGENGDEDDDDDEDDDDEDDD 1020
Score = 32.7 bits (71), Expect = 9.7
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 612 DEDDGD-DAPEPTDTANNDLDSSDDEAPNEDDDN 710
DEDD D D + D N D DS DD+ +++DD+
Sbjct: 1051 DEDDDDEDDDDEDDDDNEDDDSEDDDEDDDEDDD 1084
Score = 32.7 bits (71), Expect = 9.7
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDD 707
D+DD DD D + +D D DDE +EDDD
Sbjct: 1058 DDDDEDDDDNEDDDSEDD-DEDDDEDDDEDDD 1088
>UniRef50_Q9PQV5 Cluster: DNA-directed RNA polymerase subunit beta';
n=1; Ureaplasma parvum|Rep: DNA-directed RNA polymerase
subunit beta' - Ureaplasma parvum (Ureaplasma urealyticum
biotype 1)
Length = 1305
Score = 38.3 bits (85), Expect = 0.19
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
G +G++AAQSIGEP TQ+T+ TF
Sbjct: 1021 GTAIGVIAAQSIGEPGTQLTMRTF 1044
>UniRef50_Q3ZX00 Cluster: DNA-directed RNA polymerase subunit beta';
n=3; Dehalococcoides|Rep: DNA-directed RNA polymerase
subunit beta' - Dehalococcoides sp. (strain CBDB1)
Length = 1295
Score = 38.3 bits (85), Expect = 0.19
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +3
Query: 108 VGLLAAQSIGEPSTQMTLNTF 170
VG++AAQSIGEP TQ+TL TF
Sbjct: 941 VGIIAAQSIGEPGTQLTLRTF 961
>UniRef50_Q5YF58 Cluster: DNA-directed RNA polymerase; n=6;
Iridoviridae|Rep: DNA-directed RNA polymerase - Rock
bream iridovirus
Length = 1168
Score = 37.9 bits (84), Expect = 0.26
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 36 TDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+D ++ + + ++ ++ PG PVG++ AQ+ G TQ TLN F
Sbjct: 841 SDADRWAQEVYDAYVRALCVPGSPVGIVCAQAFGARQTQSTLNIF 885
>UniRef50_Q8I5N1 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 520
Score = 37.9 bits (84), Expect = 0.26
Identities = 14/45 (31%), Positives = 30/45 (66%)
Frame = +3
Query: 576 EQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
E++K++ + K+D+DD DD + D NN+ +++++ N D++N
Sbjct: 161 EKEKKKKKKKKNDDDDDDDDDDDNDNNNNNNNNNNNNNNNNDNNN 205
Score = 33.1 bits (72), Expect = 7.3
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = +3
Query: 573 SEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
++++K++ + K DD DD + D NN+ +++++ N ++DN
Sbjct: 158 NQKEKEKKKKKKKKNDDDDDDDDDDDNDNNNNNNNNNNNNNNNNDN 203
>UniRef50_Q8I511 Cluster: DEAD/DEAH box helicase, putative; n=6;
Plasmodium|Rep: DEAD/DEAH box helicase, putative -
Plasmodium falciparum (isolate 3D7)
Length = 894
Score = 37.9 bits (84), Expect = 0.26
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDNTAAK-IRNKR 737
D DD DD D N+D D +DD N+DD N K +NK+
Sbjct: 55 DSDDNDDEDNDEDEDNDDNDDNDDSDNNDDDHNDVKKSSKNKK 97
Score = 35.9 bits (79), Expect = 1.0
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 609 SDEDDGDDAPEPTDTANNDLDSSDDEAPNED-DDNTAAKIRN 731
+D+DDGDD + D N+D + +DD+ NE DN + + N
Sbjct: 529 NDDDDGDDNDDDNDDNNDDDNDNDDQTLNEPLSDNNSCRTYN 570
Score = 34.7 bits (76), Expect = 2.4
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 612 DEDDGDDAPEPTDT-ANNDLDSSDDEAPNEDDDN 710
D DDGDD + D + D D +DDE +ED+DN
Sbjct: 37 DNDDGDDDGDDDDEDEDEDSDDNDDEDNDEDEDN 70
Score = 33.9 bits (74), Expect = 4.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 615 EDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
+DDGDD E D ++D D D++ ++DDN
Sbjct: 42 DDDGDDDDEDEDEDSDDNDDEDNDEDEDNDDN 73
Score = 33.9 bits (74), Expect = 4.2
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 609 SDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
+D+DD DD D ++D D+ DDE +ED+DN
Sbjct: 497 NDDDDNDDDDNDDDN-DDDNDNDDDEDNDEDEDN 529
Score = 33.5 bits (73), Expect = 5.5
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 612 DEDDGD-DAPEPTDTANNDLDSSDDEAPNEDDDN 710
DEDDGD + + D +ND D+ DD ++D+DN
Sbjct: 490 DEDDGDYNDDDDNDDDDNDDDNDDDNDNDDDEDN 523
Score = 33.1 bits (72), Expect = 7.3
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+ D DD E D+ +ND + +D++ N+D+D+
Sbjct: 43 DDGDDDDEDEDEDSDDNDDEDNDEDEDNDDNDD 75
Score = 32.7 bits (71), Expect = 9.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
DED+ +D+ + D N++ + +DD N+D DN
Sbjct: 49 DEDEDEDSDDNDDEDNDEDEDNDDNDDNDDSDN 81
Score = 32.7 bits (71), Expect = 9.7
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 609 SDEDDGDDAPEPTDTANNDLDSSDDE-APNEDDDN 710
+D DD +D E D ++D D +DD+ N DDDN
Sbjct: 515 NDNDDDEDNDEDEDNDDDDGDDNDDDNDDNNDDDN 549
>UniRef50_Q5Y828 Cluster: Putative uncharacterized protein; n=9;
Atrina rigida|Rep: Putative uncharacterized protein -
Atrina rigida (Stiff penshell)
Length = 257
Score = 37.9 bits (84), Expect = 0.26
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 603 AKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
A D+DD DD + D A++D D DD+ ++DDD+
Sbjct: 165 ASDDDDDDDDDDDDDDDASDDDDDDDDDDDDDDDDD 200
Score = 37.1 bits (82), Expect = 0.45
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 600 AAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
A+ D+DD DD + D +++D D DD+ ++DDD+
Sbjct: 165 ASDDDDDDDDDDDDDDDASDDDDDDDDDDDDDDDDDD 201
Score = 36.3 bits (80), Expect = 0.78
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DDA + D ++D D DD + ++DDD+
Sbjct: 158 DDDDDDDASDDDDDDDDDDDDDDDASDDDDDDD 190
Score = 36.3 bits (80), Expect = 0.78
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DDA + D ++D D DD+ NE++D+
Sbjct: 175 DDDDDDDASDDDDDDDDDDDDDDDDDDNEEEDD 207
Score = 35.9 bits (79), Expect = 1.0
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 576 EQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
+ +++ A + D+DD DD D ++D D DD+ ++DDD+
Sbjct: 144 DDEEEEADSGDDDDDDDDDDDASDDDDDDDDDDDDDDDASDDDDD 188
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Frame = +3
Query: 600 AAKSDEDDGDD--APEPTDTANNDLDSSDDEAPNEDDDNTAA 719
+A+ DED+GDD A + D + +D DS DD+ ++DDD+ +A
Sbjct: 91 SAEEDEDNGDDSGADDGEDDSADD-DSEDDDDDDDDDDDDSA 131
Score = 34.7 bits (76), Expect = 2.4
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +3
Query: 609 SDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDNTA 716
S++DD DD + D+A+ND D DD++ ++D++ A
Sbjct: 116 SEDDDDDDDDDDDDSADND-DEEDDDSNDDDEEEEA 150
Score = 33.5 bits (73), Expect = 5.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 606 KSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
+ D+ + DD E D+ ++D D DD+ ++DDD+
Sbjct: 137 EDDDSNDDDEEEEADSGDDDDDDDDDDDASDDDDD 171
Score = 33.1 bits (72), Expect = 7.3
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 570 ASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
+++ ++ + D+DD DD + +D ++D D DD+ DDD+
Sbjct: 141 SNDDDEEEEADSGDDDDDDDDDDDASDDDDDDDDDDDDDDDASDDDD 187
Score = 33.1 bits (72), Expect = 7.3
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+D DD + D ++D D+SDD+ ++DDD+
Sbjct: 162 DDDASDDDDDDDDDDDDDDDASDDDDDDDDDDD 194
Score = 32.7 bits (71), Expect = 9.7
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DD + +D ++D D DD+ ++DDDN
Sbjct: 172 DDDDDDDDDDASD--DDDDDDDDDDDDDDDDDN 202
>UniRef50_Q4QII8 Cluster: Nucleolar RNA-binding protein, putative;
n=8; Trypanosomatidae|Rep: Nucleolar RNA-binding
protein, putative - Leishmania major
Length = 352
Score = 37.9 bits (84), Expect = 0.26
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 528 VVRKHAKATCGVMWASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDD 707
+ + A A G + E+ + + +ED+ D+ P D ++D+ D+E EDDD
Sbjct: 134 IAKTPASAAAGAEDSDEEGEDEDEDEEDEEDEDDEDMPPADLDDSDMGEEDEEVDEEDDD 193
>UniRef50_Q2N0X2 Cluster: RNA polymerase III large subunit; n=1;
Monosiga brevicollis|Rep: RNA polymerase III large
subunit - Monosiga brevicollis
Length = 233
Score = 37.9 bits (84), Expect = 0.26
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +1
Query: 193 MNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTIADVLEKID 372
MNVTLG+PR++EI N TP + N + A +++ +L +T+ +V + D
Sbjct: 4 MNVTLGVPRIKEIIN-AAKNISTPVITAKLENDRE-ESFARQVKARLETLTLGEVADHFD 61
Query: 373 VQC 381
V C
Sbjct: 62 VVC 64
>UniRef50_A2DDX6 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 332
Score = 37.9 bits (84), Expect = 0.26
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD D+A +P D +N+D D + +APNE+ N
Sbjct: 15 DDDDDDEAYQPDDNSNDDEDDDNVDAPNENLQN 47
>UniRef50_UPI0000F215EE Cluster: PREDICTED: similar to Rex2 protein;
n=3; Danio rerio|Rep: PREDICTED: similar to Rex2 protein
- Danio rerio
Length = 1278
Score = 37.5 bits (83), Expect = 0.34
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D+DD DD + D D+D DD P++DDD+
Sbjct: 175 DDDDDDDDDDDDDDCKKDVDDDDDYDPDDDDDD 207
>UniRef50_UPI000023D739 Cluster: hypothetical protein FG05595.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG05595.1 - Gibberella zeae PH-1
Length = 481
Score = 37.5 bits (83), Expect = 0.34
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +3
Query: 537 KHAKATCGVMWASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
+ AKAT E+ + KS+++D DD E +++ + SD+++ ++DDD+
Sbjct: 297 EEAKATDAKTAVKEEPALEKKTEKSEDEDSDDDTESDSDEDDEEEDSDEDSDDDDDDS 354
Score = 35.9 bits (79), Expect = 1.0
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 570 ASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDD 707
A E+K +++ SD+D D+ E + ++D DS DD+ +ED++
Sbjct: 313 ALEKKTEKSEDEDSDDDTESDSDEDDEEEDSDEDSDDDDDDSEDEE 358
>UniRef50_Q4RJP2 Cluster: Chromosome 13 SCAF15035, whole genome
shotgun sequence; n=2; Euteleostomi|Rep: Chromosome 13
SCAF15035, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 720
Score = 37.5 bits (83), Expect = 0.34
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 609 SDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
S++DDGDD +D ++D+D DD NEDDDN
Sbjct: 250 SEDDDGDDDDVDSDDDSDDVDDDDD---NEDDDN 280
>UniRef50_Q9AIH0 Cluster: DNA-directed RNA polymerase; n=17;
Candidatus Carsonella ruddii|Rep: DNA-directed RNA
polymerase - Carsonella ruddii
Length = 1292
Score = 37.5 bits (83), Expect = 0.34
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +3
Query: 99 GEPVGLLAAQSIGEPSTQMTLNTF 170
G VG+++AQSIGEP TQ+T+ TF
Sbjct: 840 GVSVGIISAQSIGEPGTQLTMRTF 863
>UniRef50_A6NYC6 Cluster: DNA-directed RNA polymerase; n=1;
Bacteroides capillosus ATCC 29799|Rep: DNA-directed RNA
polymerase - Bacteroides capillosus ATCC 29799
Length = 1101
Score = 37.5 bits (83), Expect = 0.34
Identities = 15/28 (53%), Positives = 23/28 (82%)
Frame = +3
Query: 87 MASPGEPVGLLAAQSIGEPSTQMTLNTF 170
+A+ G PVG +AA SIGEP TQ+++++F
Sbjct: 835 LAAIGLPVGFIAAHSIGEPGTQLSMDSF 862
>UniRef50_A4S7X1 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 451
Score = 37.5 bits (83), Expect = 0.34
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +3
Query: 606 KSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDNTA 716
+SD+DDGDD + ++A D D+SD++ P D+D+ A
Sbjct: 31 ESDDDDGDDGDDDEESAEEDGDASDED-PYADEDDDA 66
>UniRef50_Q8IJG6 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 3328
Score = 37.5 bits (83), Expect = 0.34
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 570 ASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDNTAAK 722
++E K R++ + DE+D D+ E D N D D DD+ +EDDD + +
Sbjct: 2848 STEDKSIRSKGDEYDEEDEDEEEEEEDDENEDDD--DDDVEDEDDDEESGE 2896
>UniRef50_Q8I5N5 Cluster: GTP-binding protein, putative; n=2;
Plasmodium|Rep: GTP-binding protein, putative -
Plasmodium falciparum (isolate 3D7)
Length = 874
Score = 37.5 bits (83), Expect = 0.34
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 531 VRKHAKATCGVMWASEQKKQRARA--AKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDD 704
+ +H+ + M E KK++ + K D+D+ DD + D +++ D DDE ++DD
Sbjct: 81 INQHSTSNGNNMMKEEGKKEQKKKYDEKDDDDEKDDDDDEKDDDDDEKDDDDDEKDDDDD 140
Query: 705 D 707
+
Sbjct: 141 E 141
>UniRef50_Q86IW7 Cluster: Similar to Mus musculus (Mouse). 13 days
embryo heart cDNA, RIKEN full-length enriched library,
clone:D330046B13 product:minichromosome maintenance
deficient (S. cerevisiae) 3-associated protein, full
insert sequence; n=2; Dictyostelium discoideum|Rep:
Similar to Mus musculus (Mouse). 13 days embryo heart
cDNA, RIKEN full-length enriched library,
clone:D330046B13 product:minichromosome maintenance
deficient (S. cerevisiae) 3-associated protein, full
insert sequence - Dictyostelium discoideum (Slime mold)
Length = 2102
Score = 37.5 bits (83), Expect = 0.34
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +3
Query: 576 EQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
+++KQ++ K++ED+ DD E + ND D +DE ++DDN
Sbjct: 297 QKQKQQSTLLKNEEDNLDDEDEIEEDDINDDDEEEDEEDEDEDDN 341
>UniRef50_Q6LFC8 Cluster: Putative uncharacterized protein; n=3;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1842
Score = 37.5 bits (83), Expect = 0.34
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +3
Query: 549 ATCGVMWASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
A+ V+ + + + K+++DD D+ + D NND D++DD+ N+DDDN
Sbjct: 501 ASSDVLNENVSSTTKMKHIKNNDDDDDNDDDNNDDDNNDDDNNDDD-NNDDDDN 553
Score = 34.7 bits (76), Expect = 2.4
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 609 SDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
+D+D+ DD + D NND D +DD+ NEDDDN
Sbjct: 533 NDDDNNDD--DNNDDDNNDDDDNDDD-DNEDDDN 563
Score = 34.3 bits (75), Expect = 3.2
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
D DD ++ + D NND D++DD+ N+DDDN
Sbjct: 527 DNDDDNNDDDNNDDDNNDDDNNDDD-DNDDDDN 558
>UniRef50_Q57YF7 Cluster: Nucleolar RNA-binding protein, putative;
n=1; Trypanosoma brucei|Rep: Nucleolar RNA-binding
protein, putative - Trypanosoma brucei
Length = 253
Score = 37.5 bits (83), Expect = 0.34
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 582 KKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
K+Q+ D DD DD E D + D + DDE +EDDD+
Sbjct: 151 KRQQVVDRTDDSDDDDDEDEEDDEDDEDDEDEDDEDEDEDDDD 193
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 663,711,004
Number of Sequences: 1657284
Number of extensions: 13062496
Number of successful extensions: 96974
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 57642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86215
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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