Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1142
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 65 1e-11
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 56 4e-09
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 49 6e-07
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 32 0.098
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 31 0.23
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.30
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.30
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 30 0.40
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.91
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 29 0.91
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 1.2
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.6
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 28 1.6
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 28 1.6
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 27 2.1
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 27 2.1
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 27 2.8
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 27 3.7
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 27 3.7
SPAC664.08c |||traub transciption factor family protein |Schizos... 27 3.7
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 4.9
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 26 6.4
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.4
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 6.4
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 8.5
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz... 25 8.5
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 8.5
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 25 8.5
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 8.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 25 8.5
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 25 8.5
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 25 8.5
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 64.9 bits (151), Expect = 1e-11
Identities = 29/56 (51%), Positives = 41/56 (73%)
Frame = +3
Query: 9 RSNSLYESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+ + L +S ++ KF +M ++ +S+ PGE VG+LA+QSIGEPSTQMTLNTF F
Sbjct: 1161 KESKLDDSLLNESKFKALMQLRYQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHF 1216
Score = 58.8 bits (136), Expect = 7e-10
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG G NVTLGIPRLREI + +TP M + LN K+A +++N++ +
Sbjct: 1214 FHFAGFGAKNVTLGIPRLREIIMTASANIQTPTMTLR-LNDGVSDKRASAFCKEVNKLVL 1272
Query: 349 ADVLEKIDVQCEIV-VXPERQLKT-TMKFTFLPHKQYKTQYAVKPTQIIKHMQNK 507
++V+ ++ V +I + Q KT ++ +Y+ +Y V +I N+
Sbjct: 1273 SEVVRQVRVTEKISGQGSDEQSKTYAIRLDLYSRDEYQDEYGVLQEEIESTFSNR 1327
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 56.4 bits (130), Expect = 4e-09
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = +3
Query: 63 MNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
+ A+F +++ SPGE VG LAAQSIGEP+TQMTLNTF +
Sbjct: 1052 VEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHY 1089
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLN-VSDVTKKAEKLRQKLNRVT 345
FH+AG NVTLG+PRL+EI N KTP++ I + ++ A+ ++ ++ T
Sbjct: 1087 FHYAGVSSKNVTLGVPRLKEILN-VAKNIKTPSLTIYLMPWIAANMDLAKNVQTQIEHTT 1145
Query: 346 IADVLEKIDV 375
++ V ++
Sbjct: 1146 LSTVTSATEI 1155
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 49.2 bits (112), Expect = 6e-07
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +3
Query: 3 KNRSNSLYESYTDKKKFVEVMNAKFLESMASPGEPVGLLAAQSIGEPSTQMTLNTFPF 176
K+ N + + + FV+ K++ + PG VG + AQSIGEP TQMTL TF F
Sbjct: 1012 KSVENIIRVTEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHF 1069
Score = 33.1 bits (72), Expect = 0.042
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = +1
Query: 169 FHFAGRGDMNVTLGIPRLREIPNDCISETKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTI 348
FHFAG TLG+PR++EI N TP + +N D + A ++ ++ + +
Sbjct: 1067 FHFAGVA-AQTTLGVPRIKEIIN-AAKTISTPIITGQLINDRD-ERSARVVKGRIEKTYL 1123
Query: 349 ADVLEKID 372
DV I+
Sbjct: 1124 KDVTSYIE 1131
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 31.9 bits (69), Expect = 0.098
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +3
Query: 570 ASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDNTAA 719
+S + ++ D D ++ + D +++D S+ E+ +ED D+T++
Sbjct: 255 SSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSS 304
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 570 ASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDS----SDDEAPNEDDDNTAA 719
A + + SDE D + + + +ND S S+ E+ +ED D++++
Sbjct: 96 AHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSS 149
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/49 (20%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 570 ASEQKKQRARAAKSDEDDGDDAPEP-TDTANNDLDSSDDEAPNEDDDNT 713
+S + ++ D D + + +++++ D DSS + + +EDD ++
Sbjct: 237 SSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSS 285
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 30.7 bits (66), Expect = 0.23
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +3
Query: 570 ASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDD 707
+SE+ K++ + +KS +DDG +A + D +++ D + E+DD
Sbjct: 145 SSEKSKKKKKKSKS-KDDGSEALDDGDIESSEKDKKKKKKSKENDD 189
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +3
Query: 531 VRKHAKATCGVMWASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
+R+H +A CG A+ ++K+ + S+ + + D +ND D+ D N +++N
Sbjct: 491 IRRHLEAMCG---ATVERKEGGSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNN 547
Query: 711 T 713
T
Sbjct: 548 T 548
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +3
Query: 531 VRKHAKATCGVMWASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
+R+H +A CG A+ ++K+ + S+ + + D +ND D+ D N +++N
Sbjct: 491 IRRHLEAMCG---ATVERKEGGSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNN 547
Query: 711 T 713
T
Sbjct: 548 T 548
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 29.9 bits (64), Expect = 0.40
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 606 KSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDNTAAKIRNKR 737
K DED+ ++ E D + + +D+ +E+D++ + R KR
Sbjct: 94 KEDEDNVEENEEEADANEEEEEDEEDDEEDEEDEDESGGGRRKR 137
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 0.91
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 274 IPFLNVSDVTKKAEKLRQKLNRVTIADVLEKIDVQCEIVVXPERQLKTTMKFTFLPHKQY 453
IP L +S + L QK++ + D+ + +D + E + Q++T K T P K Y
Sbjct: 1590 IPTLKISLIQIFRSHLWQKIHESVVWDLCQVLDQELESL-----QIETVQKETIHPRKSY 1644
Query: 454 K 456
K
Sbjct: 1645 K 1645
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 28.7 bits (61), Expect = 0.91
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 636 PEPTDTANNDLDSSDDEAPNEDDDN 710
PE D ++ ++SDD+ + DDDN
Sbjct: 458 PESVDNSDESSETSDDDLDDSDDDN 482
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +3
Query: 627 DDAPEPTDTANNDLDSSDDE 686
D++ E ++T+++DLD SDD+
Sbjct: 462 DNSDESSETSDDDLDDSDDD 481
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 155 DIEHLSILPVEVT*TSPSEYHVCGRSLMTASAK 253
D EH+SIL +V+ + S Y + G++L +++ K
Sbjct: 2455 DFEHVSILDFDVSLETQSWYPIAGKTLKSSALK 2487
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 615 EDDGDDAPEPTDTANNDLDSSDDEAPNEDDD 707
++D D+ E D NND DDE NE+D+
Sbjct: 247 DEDVDEEEEEDDDENND--EGDDEDENENDE 275
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 27.9 bits (59), Expect = 1.6
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Frame = -3
Query: 426 FHGGLQLSLWXHNDFALH-VNLF*NVRYSHSVQFLSQFLCFFCXXXXXXXXXXXVGSFSF 250
FHG +W DF L+ VNLF + + F L F +
Sbjct: 295 FHGATMDIIWLQRDFGLYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADK---RYQM 351
Query: 249 ADAVIRDLPQTW--YSEGDVH 193
AD IR LP+ Y++ D H
Sbjct: 352 ADWRIRPLPREMLKYAQSDTH 372
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = -3
Query: 501 LHVFYNLRRLHSVLRLILFVG*ECEFHGGLQLSLWXHNDFALHVNLF*NVRYSHSVQFLS 322
+H+F N + + + R + CE+ L L W H+ HV L ++ H + ++
Sbjct: 328 IHIFVNTQPISAFERTLSSKRSSCEYDHFLLLVEWHHDGIVEHVPLDDHMDAQHLLLLIT 387
Query: 321 Q 319
Q
Sbjct: 388 Q 388
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 612 DEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDNTAA 719
DE++ D E D A D+ S +++ +E+D+ + A
Sbjct: 740 DEEESDFDSEEMDKAMTDMGSDSEQSADENDNESMA 775
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 253 TKTPNMDIPFLNVSDVTKKAEKLRQKLNRVTIAD 354
T+ P DIPF + D+T + K++ K+ R+ IA+
Sbjct: 283 TQLPEDDIPFDDPFDLTSQYVKVKLKMLRLQIAN 316
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 573 SEQKKQRARAAKSDEDDGDDAPEPTDT---ANNDLDSSDDEAPNEDDDN 710
SE++ Q D DD D A + A N+ +SS DE+ +E++D+
Sbjct: 155 SEEELQEPEQENIDSDDEDLAIDGFGAGAIAENEDESSQDESESEEEDD 203
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +3
Query: 555 CGVMWASEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDD 683
C W+ KKQ SD DD P A + LD+ DD
Sbjct: 370 CTKFWSLHSKKQDILKLYSDLGINDDLVVPFCEAASSLDAIDD 412
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 576 EQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDNT 713
EQK A K+ + DD+ E T D DD+ + + N+
Sbjct: 216 EQKSVLPNAVKNIDGQDDDSSEQTAAFEEYDDDDDDDVDDNEQSNS 261
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 573 SEQKKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDNTAA 719
+ Q + S+ED+ D E + ++ SS E NEDDD ++A
Sbjct: 86 NSQSSSPSEEEDSEEDENDAVSEDHENFSSSEASSISE-ENEDDDQSSA 133
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 615 EDDGDDAPEPTDTANNDLDSSDDEAPNEDD 704
ED+ D+ P DT +++ +SD + P+ D+
Sbjct: 283 EDNEDEKKPPVDTPSDEAINSDLDDPDSDE 312
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 25.8 bits (54), Expect = 6.4
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = -1
Query: 539 LPHHRKHFIEDLFCMCFIICVGFTAYCVLY 450
+P + ++ LF +CF C C++Y
Sbjct: 609 IPFFFEELLKQLFTLCFANCESMNVRCLIY 638
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 582 KKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNEDDDN 710
KKQ + A + + DD E D ++D D +DE +ED++N
Sbjct: 186 KKQHSEA-QPEVQGNDDEVEEEDDDDDDEDEDEDE--DEDNNN 225
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 6.4
Identities = 23/82 (28%), Positives = 37/82 (45%)
Frame = +3
Query: 471 EADANYKTHAK*IFDEMFTVVRKHAKATCGVMWASEQKKQRARAAKSDEDDGDDAPEPTD 650
E +A K + F F+ ++ T + +KK+ A K +D PE D
Sbjct: 175 ETNAPEKYSTRSGFGFGFSTGTNESEITPNIKVLPPKKKKNASWGKMLNED----PE-YD 229
Query: 651 TANNDLDSSDDEAPNEDDDNTA 716
+A D S+D E +ED DN++
Sbjct: 230 SAEEDYLSTDSEEFSEDSDNSS 251
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 196 SCHLDRQNGKVFNVIWVEGSPIDWAASNPTGSPGEAIDSKN 74
S + ++ G V N I + SP D +S+PT SKN
Sbjct: 585 SDQVQKKKGNVPNAIETDSSPSDTISSSPTVRAVNLSPSKN 625
>SPBC342.04 |||adhesion regulating molecule protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 618 DDGDDAPEPTDTANNDLDSSDDEAPNEDDDNTAAKIRN 731
+ + +PT+++ +SS+ APN D+ N++ +RN
Sbjct: 137 EQSEPIAQPTESSK---ESSEIGAPNSDEINSSEAVRN 171
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -1
Query: 413 FSCLSGLTTISHCTSIFSRTSAIVTLFNFCLSFSAFFVTSD 291
+ C S L I HC + F R + +L F F TS+
Sbjct: 148 YICFSSLIRICHCWTYFIRIMGLSSLNKFVNLLHDFETTSN 188
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 624 GDDAPEPTDTANNDLDSSDDEAPNEDD 704
GD+ TA D DSS+D + NEDD
Sbjct: 266 GDENNSDIQTAV-DYDSSEDSSQNEDD 291
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +3
Query: 582 KKQRARAAKSDEDDGDDAPEPTDTANNDLDSSDDEA 689
++ R++ +S + P P ++N+D SSDD +
Sbjct: 60 EEYRSKGNQSYVPSSSNEPSPESSSNSDSSSSDDSS 95
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = +3
Query: 585 KQRARAAKSDEDDGDDAPE-----PTDTANNDLDSSDDEAPNEDDD 707
K + ++ +ED+ DDA P T + + D + P+E DD
Sbjct: 355 KSQGEISEQEEDEYDDAESDEMHSPYSTHEPESEPEDQDEPSEKDD 400
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 244 ISETKTPNMDIPFLNVSDVT 303
IS ++PN D+P LN D T
Sbjct: 349 ISPNQSPNTDVPSLNRDDTT 368
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 25.4 bits (53), Expect = 8.5
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -1
Query: 455 LYCLWGKNVNFMVVFSCLSGLTTI----SHCTSIFSRTSAIVTLFNFCLSFSAFFVT 297
L+ L+ + ++ + + +SG T + SH + + S S I+TLF LS A VT
Sbjct: 273 LFYLFWQELDGLGIVLFVSGFTLLLLPFSHSSQVVSPDSTILTLFTITLSI-ALLVT 328
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -1
Query: 434 NVNFMVVFSCLSGLTTISHCTSIFSRTSAIV 342
N+++ +V+ L + + CT +F+RTS I+
Sbjct: 48 NLDYNIVYDLLDRVISHVPCTYLFARTSLIL 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,256
Number of Sequences: 5004
Number of extensions: 53726
Number of successful extensions: 303
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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