Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1142
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    29   0.046
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.0  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   4.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.1  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 0.046
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 525 TVVRKHAKATCGVMWASEQKKQRARAAK 608
           T+VR H  +TC V  +  QKK R   AK
Sbjct: 339 TIVRNHLNSTCSVTNSPHQKKLRFHLAK 366


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = +3

Query: 588 QRARAAKSDEDDGDDAPEPTDTANNDLD-----SSDDEAPN 695
           Q+A   K + DD DD     +   +  +     SSDDE PN
Sbjct: 76  QQAGKPKEETDDKDDDESDNENIKSQKEFPNSSSSDDERPN 116


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 15  NSLYESYTDKKKFVEVMNAKFLESMASPGEPVGL--LAAQSIGEPSTQ 152
           N L  +  DK+    V +A F   M  PG+  GL   ++ S  +P  Q
Sbjct: 67  NLLLSTRYDKRLLPPVQDADFCCGMRWPGDATGLSNRSSTSSNDPKNQ 114


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 600 AAKSDEDDGDDAPEPTDTANNDLDSSDDEAPNED 701
           A  S    G     P D+  +D++SS     NED
Sbjct: 231 ATTSTPGSGSLPASPADSGVSDVESSTSSGGNED 264


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 570 ASEQKKQRARAAKSDEDDG 626
           ASE+   + +  K DEDDG
Sbjct: 205 ASEEHGNKKKKNKEDEDDG 223


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 495 HAK*IFDEMFTVVRKHAKATCGVMWASEQKK 587
           HAK   ++ F+ +R+       + W S QK+
Sbjct: 68  HAKDFLEQYFSSIRRLNSEAHRIRWESVQKE 98


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +3

Query: 624 GDDAPEPTDTANNDLDSSDDEAPNEDDDNTAAKIRNK 734
           G  A      A  ++D  DD+  ++DDD+       K
Sbjct: 375 GVGAMNANGEAVGEVDEDDDDDGDDDDDDDVEAANGK 411


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -1

Query: 323 LSFSAFFVTSDTFRKGMSMLGVLVSLMQSLGISRRRGIPRVTF 195
           LS+ +F++  +     +S+    V  M  LG+  R  +P+V +
Sbjct: 230 LSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPY 272


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 154 IWVEGSPIDWAASNPTGSPGEAIDSKNLAFIT 59
           IW+ GS +DW     +     A+ SK    +T
Sbjct: 679 IWLLGSRLDWEDHASSPLEPSAVPSKFCLSVT 710


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,394
Number of Sequences: 438
Number of extensions: 3851
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)