Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1141X
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    80   2e-16
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   1.8  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    25   4.2  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   5.5  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    25   5.5  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    25   7.3  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   7.3  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    24   9.6  

>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 79.8 bits (188), Expect = 2e-16
 Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
 Frame = +2

Query: 65  FEPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQL--VESSRICVNHIN*SCPQ 238
           F+PL  +L+N+++Q SL+WIF            SCSLA+Q+  V SS + ++        
Sbjct: 3   FDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS--TDPAHN 60

Query: 239 YL*CIHQKFSKVPTKVKRFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVG 418
                  KF K   KV  FDNL AMEIDPN+ + E+ E+    +        G+MQ++  
Sbjct: 61  LSDAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQ--ADQQNPNNPLSGMMQDLAF 118

Query: 419 AFPGIDEAMSYA 454
             PGIDEA+++A
Sbjct: 119 TIPGIDEALAFA 130



 Score = 52.8 bits (121), Expect = 2e-08
 Identities = 30/79 (37%), Positives = 40/79 (50%)
 Frame = +3

Query: 135 GKAELGKLRAVAVSQFSWSKVRESVLIISTDPAHNISDAFTRNFLKYQQRLKGLTTYSLW 314
           GK  +GK           SKVR SVL+ISTDPAHN+SDAF   F K  +++ G    S  
Sbjct: 26  GKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTKFGKDARKVPGFDNLSAM 85

Query: 315 RLIRMLD*QSCLKNILKEN 371
            +   L  Q   +   ++N
Sbjct: 86  EIDPNLSIQEMTEQADQQN 104


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 252 FTRNFLKYQQRLKGLTTYSLWRLIRML 332
           +  +F++YQ  +K   T  +W+LI++L
Sbjct: 7   YADHFVEYQNDMKRYDTLHVWKLIKLL 33


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 85  VEKCYRSKVVKVDFRWRERRSWENYVQLQSR 177
           +++  +S    +D + RER  WEN +Q  S+
Sbjct: 146 IQQALQSISHSIDLQERERIEWENTIQTSSQ 176


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 14/63 (22%), Positives = 32/63 (50%)
 Frame = +2

Query: 227 SCPQYL*CIHQKFSKVPTKVKRFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQ 406
           SCP+ L   H+ F+K+    ++  +L   + +  + +  +P+E     S+  R  + V+ 
Sbjct: 568 SCPRRLEQQHRLFAKMRANTEQSSSLAFDDKEQKLWIHSVPQEIAYSVSDRERKRQEVIC 627

Query: 407 EIV 415
           E++
Sbjct: 628 EVI 630


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 126 SLEGKAELGKLRAVAVSQFSWSKVRE 203
           +LE   E GKLRA+ VS F    ++E
Sbjct: 123 ALEKGVEEGKLRAIGVSNFGPHHIQE 148


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 262 FLVNASEILWAGSVDMINTDSRTFDQLNCETATARSFPNSAFPSNE 125
           +L N  +++ A ++     D+++ D  N   +T  S P+S   SNE
Sbjct: 348 YLANVEQLMLAEAIRQSLLDAQSNDSTNSLPSTEVSQPDSTNISNE 393


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = -3

Query: 232 AGSVDMINTDSRTFDQLN-CETATARSFPNSAFPSNENP 119
           AGS+    TDSR FD  N    A   S     FP    P
Sbjct: 351 AGSISSEGTDSRFFDVENQVSVAQTPSVKPEMFPKTARP 389


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 112 VKVDFRWRERRSWENYVQLQSRSSAGRKFANLC 210
           + + F W+++ SWE+ V L S   A   F ++C
Sbjct: 59  IGIFFAWKKKLSWEHLVLLWSTIDA---FFSMC 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,694,303
Number of Sequences: 5004
Number of extensions: 30739
Number of successful extensions: 83
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)