Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1141X
(456 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_05_0014 - 20071514-20071690,20071779-20071894,20072177-200723... 74 6e-14
02_05_0729 - 31271566-31271730,31271799-31271933,31272210-312722... 37 0.009
07_03_0460 + 18425464-18427473 29 1.3
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443... 29 1.8
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 29 2.3
07_03_0462 + 18444928-18444999,18446948-18447985,18448015-184488... 29 2.3
09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190 28 3.1
07_03_0454 + 18364654-18366594 28 4.1
09_02_0409 - 8656136-8656318,8656469-8656609,8658608-8658756,865... 27 5.4
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584 27 5.4
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964 27 5.4
03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508... 27 5.4
08_02_1228 + 25408997-25409124,25409234-25409331,25409442-254095... 27 7.2
07_03_0437 + 18197454-18197516,18198025-18198078,18198557-18198787 27 7.2
11_05_0028 - 18468407-18468859,18469070-18469228,18469361-18470227 27 9.5
09_01_0121 - 1851777-1852039,1856499-1856703 27 9.5
>09_05_0014 -
20071514-20071690,20071779-20071894,20072177-20072315,
20072649-20072672,20072879-20072989,20073089-20073239,
20073357-20073478,20074287-20074556
Length = 369
Score = 73.7 bits (173), Expect = 6e-14
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 1/127 (0%)
Frame = +2
Query: 77 EPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLVESSRICVNHIN*SCPQYL*-CI 253
+P+++N+++Q+SL+W+F CS L++ L+ S+R V I+ L
Sbjct: 12 DPTVRNLLEQESLKWVFVGGKGGVGKTTCSSILSI-LLASARQSVLVISTDPAHNLSDAF 70
Query: 254 HQKFSKVPTKVKRFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAFPGI 433
Q+F+K PT V+ F+NL+AMEIDP V + E E G + E+ A PG+
Sbjct: 71 QQRFTKFPTLVRGFNNLYAMEIDPKVENDDFANEGME----------GFLSELTNAIPGV 120
Query: 434 DEAMSYA 454
DEAMS+A
Sbjct: 121 DEAMSFA 127
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = +3
Query: 135 GKAELGKLRAVAVSQFSWSKVRESVLIISTDPAHNISDAFTRNFLKYQQRLKG 293
GK +GK ++ + R+SVL+ISTDPAHN+SDAF + F K+ ++G
Sbjct: 31 GKGGVGKTTCSSILSILLASARQSVLVISTDPAHNLSDAFQQRFTKFPTLVRG 83
>02_05_0729 -
31271566-31271730,31271799-31271933,31272210-31272284,
31273003-31273068,31273154-31273222,31273303-31273377,
31273518-31273628,31273947-31274009,31274064-31274453
Length = 382
Score = 36.7 bits (81), Expect = 0.009
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 123 FSLEGKAELGKLRAVAVSQFSWSKVRESVLIISTDPAHNISDAFTR 260
+ L GK +GK A ++ L++STDPAH++SD+F +
Sbjct: 72 YMLGGKGGVGKTSCAASLAVRFANNGHPTLVVSTDPAHSLSDSFAQ 117
>07_03_0460 + 18425464-18427473
Length = 669
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 117 GGFSLEGKAELGKLRAVAVSQFSWSKVRE--SVLIISTDPAH 236
GGFS+ K L R+VAV Q++W +E +II + +H
Sbjct: 100 GGFSVVYKGRLDDGRSVAVKQYNWRTQKEFTKEVIIQSQCSH 141
>08_01_0509 +
4433837-4434437,4434564-4434636,4435408-4437367,
4437721-4437990,4438168-4438605,4438772-4439043,
4439126-4439274,4439339-4439470,4439554-4439880,
4439963-4440357,4440551-4440861,4441304-4441394,
4441806-4441847
Length = 1686
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 120 GFSLEGKAELGKLRAVAVSQFSWSKVRESVLIISTDPAHNI 242
G SLEG ++L KLR + V F WS E +S + N+
Sbjct: 628 GKSLEGFSQLTKLRTLKVHLFWWSDAEECQNYVSALLSSNL 668
>08_01_0501 +
4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 120 GFSLEGKAELGKLRAVAVSQFSWSKVRESVLIISTDPAHNI 242
G SL+G ++L KLR + V F WS E +S + N+
Sbjct: 684 GKSLQGFSQLSKLRTLKVHLFWWSDAEECQNYVSALLSSNL 724
>07_03_0462 +
18444928-18444999,18446948-18447985,18448015-18448845,
18449112-18449120
Length = 649
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 117 GGFSLEGKAELGKLRAVAVSQFSW 188
GGFS+ K +L R+VAV Q++W
Sbjct: 86 GGFSVVYKGKLDNGRSVAVKQYNW 109
>09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190
Length = 1218
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 123 FSLEGKAELGKLRAVAVSQFSWSKVRESVLIIS 221
F L+ + LG+L+A AV WS ES+ ++S
Sbjct: 477 FDLQQRLILGELQAPAVKYVVWSSDMESIALLS 509
>07_03_0454 + 18364654-18366594
Length = 646
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 117 GGFSLEGKAELGKLRAVAVSQFSW 188
GGFS+ K L RAVAV +++W
Sbjct: 51 GGFSVVYKGRLNDGRAVAVKKYNW 74
>09_02_0409 -
8656136-8656318,8656469-8656609,8658608-8658756,
8658830-8658987,8659326-8659409,8659654-8659787,
8661255-8661389,8662159-8662551
Length = 458
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 88 EKCYRSKVVKVDFRWRERRSWEN 156
+ Y SK++K++FR R+ +WE+
Sbjct: 131 QSIYPSKILKLNFRERKENAWED 153
>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
Length = 1218
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 123 FSLEGKAELGKLRAVAVSQFSWSKVRESVLIIS 221
F L+ + LG+L+A +V WS ESV ++S
Sbjct: 477 FDLQQRLILGELQAPSVKYVVWSSDMESVALLS 509
>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
Length = 1218
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 123 FSLEGKAELGKLRAVAVSQFSWSKVRESVLIIS 221
F L+ + LG+L+A +V WS ESV ++S
Sbjct: 477 FDLQQRLILGELQAPSVKYVVWSSDMESVALLS 509
>03_05_0629 +
26248960-26249236,26249766-26249894,26250291-26250847,
26250933-26251250
Length = 426
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 180 FSWSKVRESVL--IISTDPAHNISDAFTRNFLKYQQ 281
+ W + E++L + TDP HN S F +L +QQ
Sbjct: 241 YGWEFLNEALLYHLSRTDPRHNFSIYFYHIYLHHQQ 276
>08_02_1228 +
25408997-25409124,25409234-25409331,25409442-25409507,
25409914-25409994,25410123-25410205,25410365-25410440,
25410576-25410694,25410977-25411027,25411268-25411336
Length = 256
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -3
Query: 277 WYFRKFLVNASEILWAGSVDMINTDSRTFDQLNCETATARSFPNSAFP 134
WY R + V I G VD F+QLN R F ++A P
Sbjct: 207 WYNRLYTVTGQYIDEDGDVDKYRAQIEKFNQLNVH-QLFRDFDDAALP 253
>07_03_0437 + 18197454-18197516,18198025-18198078,18198557-18198787
Length = 115
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 301 VVKPFNLCWYFRKFLVNASEILWA 230
VVK N CW++ F VNA ++ A
Sbjct: 23 VVKEKNRCWFWGAFSVNARDVFVA 46
>11_05_0028 - 18468407-18468859,18469070-18469228,18469361-18470227
Length = 492
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 254 HQKFSKVPTKVKRFDNLFAMEIDPNVGLTELPEEY 358
H +K+PT + +NLF M D +V +P ++
Sbjct: 266 HYARTKLPTIARNVENLFLMTRDEDVNTPMVPNKF 300
>09_01_0121 - 1851777-1852039,1856499-1856703
Length = 155
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 220 DMINTDSRTFDQLNCETATARSFPNSAFPSNEN 122
++I+ D +Q N E ++FP A +NEN
Sbjct: 88 ELISHDVNEEEQQNAERRNKQAFPTKALKTNEN 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,057,376
Number of Sequences: 37544
Number of extensions: 170861
Number of successful extensions: 465
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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