Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1141X
         (456 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.004
SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.20 
SB_36919| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_13209| Best HMM Match : LRR_1 (HMM E-Value=1.7e-13)                 29   2.4  
SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08)                 27   7.4  
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)                     27   9.7  
SB_37227| Best HMM Match : Sof1 (HMM E-Value=2.1)                      27   9.7  
SB_17856| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +2

Query: 380 MRLDKGVMQEIVGAFPGIDEAMSYA 454
           M + K ++ E++GAFPGIDEAMS+A
Sbjct: 2   MSMGKAMISELLGAFPGIDEAMSFA 26


>SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = +3

Query: 156 LRAVAVSQFSWSKVRESVLIISTDPAHNISDAFTRNFLKYQQRLKGLTTYSLWRLIRMLD 335
           L  V + +  W KV+E+V    T P    S  +  NF+ Y++    +   +LWRL+R   
Sbjct: 206 LEEVTIEE-KWQKVKEAV----TSPLEWNSPLYV-NFIDYEKAFDSVDRQTLWRLLRHYG 259

Query: 336 *QSCLKNILKEN 371
               + NI++++
Sbjct: 260 VPEKITNIIRKS 271


>SB_36919| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 171 VSQFSWSKVRESVLIISTDPAHNISDAFTRNFLK--YQQ 281
           VSQ SW K + +  I +  PA  + +A   NFLK  YQQ
Sbjct: 1   VSQLSWWKRKAATAIAAEPPASTVEEALD-NFLKCYYQQ 38


>SB_13209| Best HMM Match : LRR_1 (HMM E-Value=1.7e-13)
          Length = 489

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 192 KVRESVLIISTDPAHNISDAFTR-NFLKYQQRLKGLTTYSLWRLIRMLD 335
           K+  S L    D      D+ TR  F +  +RLK +  Y L +L+ MLD
Sbjct: 425 KIHSSDLFKRLDENEQFRDSLTRAEFTEGMKRLKVMNDYYLDKLVEMLD 473


>SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08)
          Length = 421

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 261 NFLKYQQRLKGLTTYSLWRLIRMLD*QSCLKNILKEN 371
           NF+ Y++    +   +LWRL+R       + NI++++
Sbjct: 57  NFIDYEKAFDSVDRQTLWRLLRHYGVSEKITNIIRKS 93


>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
          Length = 534

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 261 NFLKYQQRLKGLTTYSLWRLIRMLD*QSCLKNILKEN 371
           NF+ Y++    +   +LWRL+R       + NI++++
Sbjct: 21  NFIDYEKAFDSVDRQTLWRLLRHYGVPEKITNIIRKS 57


>SB_37227| Best HMM Match : Sof1 (HMM E-Value=2.1)
          Length = 232

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 144 ELGKLRAVAVSQFSWSKVRESVLIISTDPAHNISDA 251
           E  KL        SW  +  S LI S DP H +SDA
Sbjct: 175 EFYKLGNTVRDLISWC-IETSRLIASDDPVHTVSDA 209


>SB_17856| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 261 NFLKYQQRLKGLTTYSLWRLIRMLD*QSCLKNILKEN 371
           NF+ Y++    +   +LWRL+R       + NI++++
Sbjct: 96  NFIDYEKAFDSVDRQTLWRLLRHYGVPEKITNIIRKS 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,888,249
Number of Sequences: 59808
Number of extensions: 212711
Number of successful extensions: 515
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)