Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1141X
         (456 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113636-1|AAM29641.1|  336|Drosophila melanogaster RH73327p pro...   149   1e-36
AY070974-1|AAL48596.1|  336|Drosophila melanogaster RE07422p pro...   149   1e-36
AE013599-448|AAF59231.1|  336|Drosophila melanogaster CG1598-PA ...   149   1e-36
BT001458-1|AAN71213.1|  119|Drosophila melanogaster GM18141p pro...    54   9e-08

>AY113636-1|AAM29641.1|  336|Drosophila melanogaster RH73327p
           protein.
          Length = 336

 Score =  149 bits (362), Expect = 1e-36
 Identities = 74/131 (56%), Positives = 89/131 (67%)
 Frame = +2

Query: 62  DFEPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLVESSRICVNHIN*SCPQY 241
           + EPLEPSL+N+++Q SL+WIF           CS SLAVQL +     +          
Sbjct: 4   NLEPLEPSLQNLVEQDSLKWIFVGGKGGVGKTTCSSSLAVQLSKVRESVLIISTDPAHNI 63

Query: 242 L*CIHQKFSKVPTKVKRFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGA 421
                QKF+KVPTKV  FDNLFAMEIDPN GL ELPEEYF+GE+EA+R+ KGVMQE++ A
Sbjct: 64  SDAFDQKFTKVPTKVNGFDNLFAMEIDPNAGLNELPEEYFDGENEALRVSKGVMQEMINA 123

Query: 422 FPGIDEAMSYA 454
            PGIDEAMSYA
Sbjct: 124 LPGIDEAMSYA 134


>AY070974-1|AAL48596.1|  336|Drosophila melanogaster RE07422p
           protein.
          Length = 336

 Score =  149 bits (362), Expect = 1e-36
 Identities = 74/131 (56%), Positives = 89/131 (67%)
 Frame = +2

Query: 62  DFEPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLVESSRICVNHIN*SCPQY 241
           + EPLEPSL+N+++Q SL+WIF           CS SLAVQL +     +          
Sbjct: 4   NLEPLEPSLQNLVEQDSLKWIFVGGKGGVGKTTCSSSLAVQLSKVRESVLIISTDPAHNI 63

Query: 242 L*CIHQKFSKVPTKVKRFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGA 421
                QKF+KVPTKV  FDNLFAMEIDPN GL ELPEEYF+GE+EA+R+ KGVMQE++ A
Sbjct: 64  SDAFDQKFTKVPTKVNGFDNLFAMEIDPNAGLNELPEEYFDGENEALRVSKGVMQEMINA 123

Query: 422 FPGIDEAMSYA 454
            PGIDEAMSYA
Sbjct: 124 LPGIDEAMSYA 134


>AE013599-448|AAF59231.1|  336|Drosophila melanogaster CG1598-PA
           protein.
          Length = 336

 Score =  149 bits (362), Expect = 1e-36
 Identities = 74/131 (56%), Positives = 89/131 (67%)
 Frame = +2

Query: 62  DFEPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLVESSRICVNHIN*SCPQY 241
           + EPLEPSL+N+++Q SL+WIF           CS SLAVQL +     +          
Sbjct: 4   NLEPLEPSLQNLVEQDSLKWIFVGGKGGVGKTTCSSSLAVQLSKVRESVLIISTDPAHNI 63

Query: 242 L*CIHQKFSKVPTKVKRFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGA 421
                QKF+KVPTKV  FDNLFAMEIDPN GL ELPEEYF+GE+EA+R+ KGVMQE++ A
Sbjct: 64  SDAFDQKFTKVPTKVNGFDNLFAMEIDPNAGLNELPEEYFDGENEALRVSKGVMQEMINA 123

Query: 422 FPGIDEAMSYA 454
            PGIDEAMSYA
Sbjct: 124 LPGIDEAMSYA 134


>BT001458-1|AAN71213.1|  119|Drosophila melanogaster GM18141p
           protein.
          Length = 119

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 27/45 (60%), Positives = 31/45 (68%)
 Frame = +3

Query: 135 GKAELGKLRAVAVSQFSWSKVRESVLIISTDPAHNISDAFTRNFL 269
           GK  +GK    +      SKVRESVLIISTDPAHNISDAF + +L
Sbjct: 28  GKGGVGKTTCSSSLAVQLSKVRESVLIISTDPAHNISDAFDQKYL 72



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = +2

Query: 62  DFEPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQL 187
           + EPLEPSL+N+++Q SL+WIF           CS SLAVQL
Sbjct: 4   NLEPLEPSLQNLVEQDSLKWIFVGGKGGVGKTTCSSSLAVQL 45


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,295,231
Number of Sequences: 53049
Number of extensions: 304663
Number of successful extensions: 1027
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1497419784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)