Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1141X
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical p...    83   1e-16
AC006611-3|AAM15554.1|  798|Caenorhabditis elegans Protein kinas...    29   2.1  
AC006611-2|AAK85457.1|  867|Caenorhabditis elegans Protein kinas...    29   2.1  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z49073-7|CAE18044.1|  143|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK637.5 protein.
          Length = 342

 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 54/138 (39%), Positives = 69/138 (50%), Gaps = 10/138 (7%)
 Frame = +2

Query: 68  EPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLVESSRICVNHIN*SCPQYL* 247
           + LE S+KN+++QK+L+WIF           CSCSLA QL +     +            
Sbjct: 3   DQLEASIKNILEQKTLKWIFVGGKGGVGKTTCSCSLAAQLSKVRERVLLISTDPAHNISD 62

Query: 248 CIHQKFSKVPTKVKRFDNLFAMEID--PNVGLTELP--EEYF------EGESEAMRLDKG 397
              QKF+K PT V+ F NLFAMEID  PN    E+   EE        EG S    + K 
Sbjct: 63  AFSQKFTKTPTLVEGFKNLFAMEIDSNPNGEGVEMGNIEEMLQNAAQNEGGSGGFSMGKD 122

Query: 398 VMQEIVGAFPGIDEAMSY 451
            +Q   G  PGIDEAMS+
Sbjct: 123 FLQSFAGGLPGIDEAMSF 140



 Score = 53.2 bits (122), Expect = 9e-08
 Identities = 27/53 (50%), Positives = 33/53 (62%)
 Frame = +3

Query: 135 GKAELGKLRAVAVSQFSWSKVRESVLIISTDPAHNISDAFTRNFLKYQQRLKG 293
           GK  +GK           SKVRE VL+ISTDPAHNISDAF++ F K    ++G
Sbjct: 25  GKGGVGKTTCSCSLAAQLSKVRERVLLISTDPAHNISDAFSQKFTKTPTLVEG 77


>AC006611-3|AAM15554.1|  798|Caenorhabditis elegans Protein kinase
           protein 32, isoformb protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 454 SIAHSLINTRKSSNNLLHDTLVQSHSLRFSFK 359
           S +HS +   ++SN  LH T   + SLRF  K
Sbjct: 630 STSHSSVENIRTSNGYLHHTPTSTRSLRFEDK 661


>AC006611-2|AAK85457.1|  867|Caenorhabditis elegans Protein kinase
           protein 32, isoforma protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 454 SIAHSLINTRKSSNNLLHDTLVQSHSLRFSFK 359
           S +HS +   ++SN  LH T   + SLRF  K
Sbjct: 699 STSHSSVENIRTSNGYLHHTPTSTRSLRFEDK 730


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
           protein R03G5.3 protein.
          Length = 1311

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 235 WAGSVDMINTDSRTFDQLNCETATARSFPNSAF-PSNEN 122
           W+ S+ +I+TD + F       +   SFPN+ F  SN N
Sbjct: 759 WSESIRVIHTDFKDFAFFKSLASVETSFPNTIFDESNIN 797


>Z49073-7|CAE18044.1|  143|Caenorhabditis elegans Hypothetical
           protein ZK970.8 protein.
          Length = 143

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 220 DMINTDSRTFDQLNCETATARSFPNSAFPSNENPP*RLLI 101
           D+IN D R   ++ C    +  FP     + EN P +L +
Sbjct: 32  DLINEDDRNLHKVVCRRCKSVIFPEDVVMTVENQPYQLRV 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,127,962
Number of Sequences: 27780
Number of extensions: 164535
Number of successful extensions: 377
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)