Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1141X
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   6.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = -3

Query: 247 SEILWAGSVDMINTDSRTFDQLNCETATARSFPNSA 140
           S+ +W   + + N+   TFDQ      T   F + +
Sbjct: 121 SDDIWVPDISVYNSGDMTFDQTGIPPTTCLVFSSGS 156


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 374 EAMRLDKGVMQEIVGAFPGI 433
           EA+RLD   + +I G F  I
Sbjct: 529 EAIRLDGNFLSDINGVFTSI 548


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 264 FLKYQQRLKGLTTYSLWRLIRMLD 335
           F K  QR+K    Y +WR  R+++
Sbjct: 132 FKKSVQRIKPYDEYYVWRDARIVN 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,759
Number of Sequences: 438
Number of extensions: 2196
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)