Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1140
         (623 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q25490 Cluster: Apolipophorins precursor [Contains: Apo...    64   3e-09
UniRef50_UPI0000DB72C7 Cluster: PREDICTED: similar to Retinoid- ...    39   0.085
UniRef50_A6S5J0 Cluster: Predicted protein; n=1; Botryotinia fuc...    35   1.8  
UniRef50_UPI00005A977E Cluster: PREDICTED: similar to beta-tubul...    33   4.2  
UniRef50_UPI00015B417B Cluster: PREDICTED: similar to apolipopho...    32   9.7  
UniRef50_Q8I335 Cluster: GTP-binding protein, putative; n=1; Pla...    32   9.7  

>UniRef50_Q25490 Cluster: Apolipophorins precursor [Contains:
            Apolipophorin-2 (Apolipophorin II) (apoLp-2);
            Apolipophorin-1 (Apolipophorin I) (apoLp-1)]; n=5;
            Ditrysia|Rep: Apolipophorins precursor [Contains:
            Apolipophorin-2 (Apolipophorin II) (apoLp-2);
            Apolipophorin-1 (Apolipophorin I) (apoLp-1)] - Manduca
            sexta (Tobacco hawkmoth) (Tobacco hornworm)
          Length = 3305

 Score = 63.7 bits (148), Expect = 3e-09
 Identities = 35/83 (42%), Positives = 42/83 (50%)
 Frame = +3

Query: 261  DMSPFRQACIHAGHGTDAAKDLHEACDLGRGMAALGLTGLLPAVLPNVCVKCTDADKPRT 440
            D++PFRQACIHA  G DA KDL +ACDL RG       G  P   P        A  P +
Sbjct: 2937 DIAPFRQACIHAVTGADADKDLQQACDLARGYRRSRSRGCCPPRCPTPACAARTATGPGS 2996

Query: 441  SEIAMNSKFPTNRLILSYQLRQL 509
                 ++  PT+ LI S  LR L
Sbjct: 2997 WATPTSTNCPTDSLISSSPLRPL 3019



 Score = 56.4 bits (130), Expect = 5e-07
 Identities = 24/32 (75%), Positives = 28/32 (87%)
 Frame = +1

Query: 526  YKDIVVPLVSHLIDSLKSKHITDVKVFLVGHT 621
            YK++VVPLVS L+D LK KH TD+KVFLVGHT
Sbjct: 3026 YKNMVVPLVSQLVDMLKGKHCTDIKVFLVGHT 3057


>UniRef50_UPI0000DB72C7 Cluster: PREDICTED: similar to Retinoid- and
            fatty-acid binding protein CG11064-PA isoform 1; n=1;
            Apis mellifera|Rep: PREDICTED: similar to Retinoid- and
            fatty-acid binding protein CG11064-PA isoform 1 - Apis
            mellifera
          Length = 3360

 Score = 39.1 bits (87), Expect = 0.085
 Identities = 15/36 (41%), Positives = 26/36 (72%)
 Frame = +1

Query: 514  NAKTYKDIVVPLVSHLIDSLKSKHITDVKVFLVGHT 621
            N K YK+++ PL+S L + LK + +TDV + L+G++
Sbjct: 3069 NDKVYKEMITPLMSELREELKQQGVTDVHIGLIGYS 3104



 Score = 33.9 bits (74), Expect = 3.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 437  DIGDSYEFKVPNKQADIILSVETTNPMQRL 526
            D+GDS+  KVP K+AD+I  +E   P  ++
Sbjct: 3043 DMGDSFSVKVPKKEADVIFVIEQQIPNDKV 3072


>UniRef50_A6S5J0 Cluster: Predicted protein; n=1; Botryotinia
           fuckeliana B05.10|Rep: Predicted protein - Botryotinia
           fuckeliana B05.10
          Length = 330

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 446 LRCPRLICISTLDAYVRKYGRKKAGQAQSCHSSSQITSFVQIFS 315
           L C RL  +S++D Y R Y + + G+  SC +S+    F Q  S
Sbjct: 156 LACERLNYVSSIDIYPRIYHKIRPGRIMSCPASATFEDFYQALS 199


>UniRef50_UPI00005A977E Cluster: PREDICTED: similar to beta-tubulin
           cofactor D; n=1; Canis lupus familiaris|Rep: PREDICTED:
           similar to beta-tubulin cofactor D - Canis familiaris
          Length = 327

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 268 RLSDKRVFTPVTAQTPLKICTK--LVIWDEEWQLW 366
           RL D RVFTPV    P+K+CT    V W +    W
Sbjct: 262 RLEDGRVFTPVGVLLPIKLCTAAVFVTWSDIMVPW 296


>UniRef50_UPI00015B417B Cluster: PREDICTED: similar to apolipophorin;
            n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
            apolipophorin - Nasonia vitripennis
          Length = 3385

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 514  NAKTYKDIVVPLVSHLIDSLKSKHITDVKVFLVG 615
            N K +K+++ P+++ L   LK + ITDV + L+G
Sbjct: 3090 NEKAFKELIKPVMNELRTELKQQGITDVFIGLIG 3123


>UniRef50_Q8I335 Cluster: GTP-binding protein, putative; n=1;
           Plasmodium falciparum 3D7|Rep: GTP-binding protein,
           putative - Plasmodium falciparum (isolate 3D7)
          Length = 1085

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = -1

Query: 248 CLVSYLNLEIKLECSSHKKKCK*MEYNTKLI-----NT*SYFESKYLNEKYVRLHCINCL 84
           C VS  N  I  ECSS  KK      + +L      NT  + +S+   EKY+R  CI  L
Sbjct: 184 CSVSSNN-NILNECSSEVKKEMNYPLHNELYDNLNDNTIGHLKSEKCKEKYIRNFCI--L 240

Query: 83  AYVNDGKS 60
           A+++ GKS
Sbjct: 241 AHIDSGKS 248


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,384,907
Number of Sequences: 1657284
Number of extensions: 9697057
Number of successful extensions: 23755
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23750
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)