Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1140
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    28   0.95 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.7  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    26   3.8  

>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 267 SPFRQACIHAGHGTDAAKDLHEACDLGRGMAALGLTG 377
           SPF +A I +G GTD A +        RG+ ++GL G
Sbjct: 344 SPFYKALIESGLGTDFAPNSGYDSTTKRGIFSVGLEG 380


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 532  PCKSLHWISCLN**DNISLFVGNFEFIAISDVLGLSASVH 413
            P K +HWIS      +      +FE + +SD+LG+    H
Sbjct: 1403 PLKPVHWISLFEITKSTEQL--DFEKLLVSDILGIDLQAH 1440


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 384 PAVLPNVCVKCTDADKPRTSEIAMNSKFPTNRLI 485
           P ++PN  +  TD D P T  +++N      RLI
Sbjct: 168 PVIIPNSAISSTDPDDPET-VVSLNVDEMIQRLI 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,330
Number of Sequences: 5004
Number of extensions: 44055
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)