Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1140
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024860-3|AAK29985.1|  345|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z35600-2|CAA84663.1|  394|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z82268-7|CAB05196.2|  138|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF040655-1|AAK84577.2|  678|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AC024860-3|AAK29985.1|  345|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.2 protein.
          Length = 345

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 438 TSEIAMNSKFPTNRLILSYQLRQLIQCKDLQGYRG 542
           TS I       TN  +LS+  +QLI C D QGY+G
Sbjct: 112 TSSIESMYAKATNGTLLSFSEQQLIDCND-QGYKG 145


>Z35600-2|CAA84663.1|  394|Caenorhabditis elegans Hypothetical
           protein F37A8.2 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 414 CTDADKPRTSEIAMNSKFPTNRLILSYQLRQLIQCKDLQGYR 539
           C   + P+TSE+ +    PT +   SY +   ++  D++ YR
Sbjct: 86  CDLCESPKTSELRVAHDAPTFQTTYSYSISWDVEMDDVEHYR 127


>Z82268-7|CAB05196.2|  138|Caenorhabditis elegans Hypothetical
           protein F52B11.6 protein.
          Length = 138

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 5/32 (15%)
 Frame = +3

Query: 414 CTDADKPRTS-----EIAMNSKFPTNRLILSY 494
           C  +DKP+TS     ++A +++ PTN  I+SY
Sbjct: 100 CQPSDKPKTSAQQLLQLACSARRPTNEQIISY 131


>AF040655-1|AAK84577.2|  678|Caenorhabditis elegans Hypothetical
           protein T24E12.5 protein.
          Length = 678

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 294 AGHGTDAAKDLHEACDLGRGMAALGLTGLLPAVLPNV 404
           AG G  +   +  A   G G  A+GLT +LPAVL  V
Sbjct: 45  AGTGAASTAGVVAASAAGVGAGAVGLTLVLPAVLMGV 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,776,806
Number of Sequences: 27780
Number of extensions: 250164
Number of successful extensions: 595
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)