Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1140
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28210.1 68418.m03416 mRNA capping enzyme family protein simi...    28   5.8  
At3g16180.1 68416.m02043 proton-dependent oligopeptide transport...    28   5.8  

>At5g28210.1 68418.m03416 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF03919: mRNA capping enzyme
           C-terminal domain
          Length = 625

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 221 IKLECSSHKKKCK*MEYNTKLINT*SYFESKYLNEKYVRLHC 96
           +K+ CS        +  NT  ++  + FE+  L+EKY+ +HC
Sbjct: 122 VKIRCSGRDSVPDNVSVNT-FVHEVTQFENHNLSEKYLLVHC 162


>At3g16180.1 68416.m02043 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 591

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 351 GMAALGLTGLLPAVLPNVCVKC--TDADKPRTSEIAM 455
           GM  L LT +LP V P+ CV    T+     +S++A+
Sbjct: 108 GMVVLWLTAMLPQVKPSPCVATAGTNCSSATSSQLAL 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,884,643
Number of Sequences: 28952
Number of extensions: 224097
Number of successful extensions: 592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)