Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1139X
         (408 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   0.87 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   0.87 
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      22   2.0  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   2.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   3.5  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 103 GAAGDSHTPPPGLPHRLN 50
           G+ GD+HTPP      LN
Sbjct: 661 GSMGDAHTPPEDDAESLN 678


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 103 GAAGDSHTPPPGLPHRLN 50
           G+ GD+HTPP      LN
Sbjct: 553 GSMGDAHTPPEDDAESLN 570


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 206 VECMCQAGEGVGARARVPRGI 268
           +ECMC+   GV   A +P+ I
Sbjct: 123 LECMCRPCTGVEESAVIPQEI 143


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 294 PNYSPHRPANTPP 332
           PN SPH    TPP
Sbjct: 411 PNVSPHYVTPTPP 423


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 285 HYAPNYSPHRPANTPP 332
           H+A N++P  P N+ P
Sbjct: 98  HFAYNHNPLTPPNSEP 113


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.314    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,268
Number of Sequences: 336
Number of extensions: 938
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)