Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1139X
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    35   0.004
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    24   7.9  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 35.1 bits (77), Expect = 0.004
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 234 GWGLGRASPAESGAYPAHYAPNYSPHRPANTPP 332
           GW LG  S  + G +P++Y     P+  AN PP
Sbjct: 761 GWWLGENSKGQQGLFPSNYVEITGPNETANNPP 793


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 318 RVGAASS*ARSVPGMRRIPRGTRARAPTPS 229
           R G   S     P MRR P G  +R+P+ S
Sbjct: 340 RAGTPQSSPNFNPAMRRSPVGAASRSPSRS 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,044,891
Number of Sequences: 5004
Number of extensions: 13582
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)