Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1139X
(408 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368 31 0.35
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 31 0.47
04_03_0738 + 19169764-19169897,19169987-19170116,19170614-191706... 29 1.9
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 28 3.3
06_03_0857 + 25443251-25444429 27 5.7
04_03_0742 + 19200045-19200053,19200158-19200437,19201331-192015... 27 5.7
02_01_0302 - 2021221-2023305 27 5.7
11_06_0695 - 26340161-26340804,26342057-26343429,26344074-263441... 27 7.6
09_04_0306 + 16555664-16556623 27 7.6
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 27 7.6
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563 27 7.6
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 27 7.6
>12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368
Length = 487
Score = 31.1 bits (67), Expect = 0.35
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 225 RGRGWGLGRASPAESGAYPAHYAPNYSP---HRPANTPP 332
RG G G GRA+P+ G+ P HY +P AN PP
Sbjct: 163 RGVGGGSGRATPSFPGSSPHHYPSTPTPASAAAAANYPP 201
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 30.7 bits (66), Expect = 0.47
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 252 ASPAESGAYPAHYAPNYSPHRPANTPPH 335
A P +P H+ P++ PH P + PPH
Sbjct: 25 APPPPHLRHPHHHPPHHHPHPPHHHPPH 52
>04_03_0738 +
19169764-19169897,19169987-19170116,19170614-19170687,
19171208-19171288,19172054-19172087
Length = 150
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 106 HGAAGDSHTPPPGLPHR-LNSPATD 35
H A G++H PPPG P + + SP D
Sbjct: 71 HRAGGEAHRPPPGSPRQPVISPMKD 95
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 112 TRHGAAGDSHTPPPGLPHRLNSPA 41
T H GD ++PPP P +SPA
Sbjct: 13 TGHSGHGDLNSPPPAAPAGASSPA 36
>06_03_0857 + 25443251-25444429
Length = 392
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +3
Query: 225 RGRGWGLGRASPAESGAYPAHYAPNYSPHRPANTP 329
RGRG G GR G PA SP A TP
Sbjct: 258 RGRGRGGGRGGRRGRGRTPARVVAEDSPMLQATTP 292
>04_03_0742 +
19200045-19200053,19200158-19200437,19201331-19201545,
19201705-19201792,19202277-19202842
Length = 385
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 246 GRASPAESGAYPAHYAPNYSPHRPANTPPHTTWTTLRP 359
G P AYP Y P+Y P + PP+ + + P
Sbjct: 333 GYYPPGPGYAYPPPYPPSYPPPYQPSYPPYPSHPSHHP 370
>02_01_0302 - 2021221-2023305
Length = 694
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 258 PAESGAYPAHYAPNYSPHRPANTPPHTTWTTLRP 359
P+ S A P+H P +P P+ P T+T P
Sbjct: 522 PSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPP 555
>11_06_0695 -
26340161-26340804,26342057-26343429,26344074-26344173,
26345230-26345362,26346857-26347258
Length = 883
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +3
Query: 207 WS--VCVRRGRGWGLGRASPAESGAYPAHYAPNY 302
WS V + R WG G+ +P E A A YA Y
Sbjct: 247 WSPNVNIFRDPRWGRGQETPGEDPAVAARYAAAY 280
>09_04_0306 + 16555664-16556623
Length = 319
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 252 ASPAESGAYPAHYAPNYSPHRPANTPPH 335
A A AYPA YA Y HR +PPH
Sbjct: 134 AMHAHYPAYPA-YASYYGSHRFGPSPPH 160
>07_03_1552 -
27648193-27648307,27648384-27648431,27649140-27649234,
27649311-27649376,27649721-27649810,27650210-27650437,
27650572-27650605,27651106-27651611
Length = 393
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 273 RRIPRGTRARAPTPSPA*HIHSTY 202
RR P T+ + P SPA H+H Y
Sbjct: 32 RRTPSTTQPQLPQNSPAPHLHCRY 55
>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
Length = 571
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 246 GRASPAESGAYPAHYAPNYSPHRPANTPPHT 338
G SP+ Y Y+P P P+ TP HT
Sbjct: 199 GPRSPSSRAPYSPVYSPYPHPVSPSYTPGHT 229
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 26.6 bits (56), Expect = 7.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 279 PAHYAPNYSPHRPANTPPHT 338
P +Y P+Y PH+ N PP T
Sbjct: 430 PPNY-PHYQPHQSLNPPPET 448
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.133 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,334,477
Number of Sequences: 37544
Number of extensions: 130707
Number of successful extensions: 497
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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