Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1139X
         (408 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45)                  29   1.1  
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)                   29   1.1  
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)         29   1.5  
SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.6  
SB_38421| Best HMM Match : Pox_A32 (HMM E-Value=0.022)                 28   3.4  
SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)                 28   3.4  
SB_57398| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  

>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 240 GLGRASPAESGAYPAHYAPNYSPHRPANTPPHTTWTTLRP 359
           G+G A P  + + PA +AP   P + A  PP T  +TL P
Sbjct: 302 GVGEAPPPPAASEPAAFAPAPPPSQ-APPPPKTIPSTLPP 340


>SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45)
          Length = 248

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +3

Query: 222 RRGRGWGLGRASPAE-SGAYPAH--YAPNYSPHRP 317
           RRGRG+G G AS  E S A P +  + P +S  RP
Sbjct: 152 RRGRGFGFGNASRHERSSALPGYSTHDPRHSNDRP 186


>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
          Length = 237

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = +3

Query: 279 PAHYAPNYSPHRPANT----PPHTTWTTLRP 359
           PA Y P Y+P+ PA+T    PP T+ +T  P
Sbjct: 86  PASYTPAYTPYTPASTVGRMPPTTSQSTPSP 116


>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
          Length = 1052

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 252 ASPAESGAYPAHY--APNYSPHRPANTPPHTTWTTLRP 359
           ASP+ S A P++   +P+YSP  P+N+P   +++   P
Sbjct: 706 ASPSYSPASPSYSPTSPSYSPAIPSNSPASPSYSPASP 743


>SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 258 PAESGAYPAHYAP-NYSPHRPANTPP 332
           P  + A  AH +P  + PH+P  TPP
Sbjct: 444 PTSASANTAHISPCKHCPHQPVQTPP 469



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 258 PAESGAYPAHYAP-NYSPHRPANTPP 332
           P  + A  AH +P  + PH+P  TPP
Sbjct: 644 PTSARANTAHISPYKHCPHQPVQTPP 669


>SB_38421| Best HMM Match : Pox_A32 (HMM E-Value=0.022)
          Length = 1144

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 254  VPRGIRRIPGTLRA*LLAAPTRQHAPTHH 340
            VP    R PG  ++ LLA  TR H+ TH+
Sbjct: 974  VPATALRAPGQCKSRLLAMETRTHSITHY 1002


>SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)
          Length = 469

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 243 LGRASPAESGAYPAHYAPNYS-PHRPANTPP 332
           LGRA P +S + P    P+Y  P RPA   P
Sbjct: 419 LGRAHPYKSDSTPVLLKPSYKRPSRPAKQKP 449


>SB_57398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 337 VCGGVLAGRCGE*LGA*CAGYAPDSAG 257
           VCG  L G CG  L   C  Y P   G
Sbjct: 164 VCGSYLTGVCGSYLTGVCGWYLPGICG 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,771,201
Number of Sequences: 59808
Number of extensions: 133817
Number of successful extensions: 392
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)