Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1139X
(408 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK131081-1|BAC85131.1| 440|Homo sapiens FLJ00280 protein protein. 31 1.1
AL161779-2|CAI42091.1| 1478|Homo sapiens IQ motif and Sec7 domai... 30 2.6
AL139396-1|CAI39832.1| 1478|Homo sapiens IQ motif and Sec7 domai... 30 2.6
AB011094-1|BAA25448.1| 1560|Homo sapiens KIAA0522 protein protein. 30 2.6
X69910-1|CAA49535.2| 602|Homo sapiens P63 protein protein. 29 4.6
U51095-1|AAB40602.1| 265|Homo sapiens homeobox protein Cdx1 pro... 29 4.6
U16360-1|AAA80284.1| 148|Homo sapiens caudal-type homeobox prot... 29 4.6
BC082972-1|AAH82972.1| 602|Homo sapiens cytoskeleton-associated... 29 4.6
AK223563-1|BAD97283.1| 602|Homo sapiens cytoskeleton-associated... 29 4.6
AK098372-1|BAC05294.1| 243|Homo sapiens protein ( Homo sapiens ... 29 8.0
>AK131081-1|BAC85131.1| 440|Homo sapiens FLJ00280 protein protein.
Length = 440
Score = 31.5 bits (68), Expect = 1.1
Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +2
Query: 218 CQAGEGVGARARVPRGIRRIPGTLRA*LLAAPTRQHA--PTHH--LDHTPT 358
C A +G R P GI R PGTL P R H+ P H L HTPT
Sbjct: 10 CHA-DGTRTRTLPPPGILRTPGTLPCPGTLPPPRTHSYLPGHSPLLGHTPT 59
>AL161779-2|CAI42091.1| 1478|Homo sapiens IQ motif and Sec7 domain 2
protein.
Length = 1478
Score = 30.3 bits (65), Expect = 2.6
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 228 GRGWGLGRASPAESGAYPAHYAPNYSPHRPANTPPHTTWTTLRP 359
G G G P S ++P H SPH P PPH ++ L P
Sbjct: 1391 GAAGGPGSRPPGGSYSHPHHPQSPLSPHSP--IPPHPSYPPLPP 1432
>AL139396-1|CAI39832.1| 1478|Homo sapiens IQ motif and Sec7 domain 2
protein.
Length = 1478
Score = 30.3 bits (65), Expect = 2.6
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 228 GRGWGLGRASPAESGAYPAHYAPNYSPHRPANTPPHTTWTTLRP 359
G G G P S ++P H SPH P PPH ++ L P
Sbjct: 1391 GAAGGPGSRPPGGSYSHPHHPQSPLSPHSP--IPPHPSYPPLPP 1432
>AB011094-1|BAA25448.1| 1560|Homo sapiens KIAA0522 protein protein.
Length = 1560
Score = 30.3 bits (65), Expect = 2.6
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 228 GRGWGLGRASPAESGAYPAHYAPNYSPHRPANTPPHTTWTTLRP 359
G G G P S ++P H SPH P PPH ++ L P
Sbjct: 1468 GAAGGPGSRPPGGSYSHPHHPQSPLSPHSP--IPPHPSYPPLPP 1509
>X69910-1|CAA49535.2| 602|Homo sapiens P63 protein protein.
Length = 602
Score = 29.5 bits (63), Expect = 4.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 222 RRGRGWGLGRASPAESGAYPAHYAPNYS---PHRPANTPP 332
+RG G G ASP+E GA+P+ A + + P P PP
Sbjct: 6 QRGSKGGHGAASPSEKGAHPSGGADDVAKKPPPAPQQPPP 45
>U51095-1|AAB40602.1| 265|Homo sapiens homeobox protein Cdx1
protein.
Length = 265
Score = 29.5 bits (63), Expect = 4.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 246 GRASPAESGAYPAHYAPNYSPHRPANTPPHTTWTTLRP 359
G A PA G PA+Y P P P P ++++ + P
Sbjct: 16 GPARPASLGLGPANYGPPAPPPAPPQYPDFSSYSHVEP 53
>U16360-1|AAA80284.1| 148|Homo sapiens caudal-type homeobox protein
protein.
Length = 148
Score = 29.5 bits (63), Expect = 4.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 246 GRASPAESGAYPAHYAPNYSPHRPANTPPHTTWTTLRP 359
G A PA G PA+Y P P P P ++++ + P
Sbjct: 16 GPARPASLGLGPANYGPPAPPPAPPQYPDFSSYSHVEP 53
>BC082972-1|AAH82972.1| 602|Homo sapiens cytoskeleton-associated
protein 4 protein.
Length = 602
Score = 29.5 bits (63), Expect = 4.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 222 RRGRGWGLGRASPAESGAYPAHYAPNYS---PHRPANTPP 332
+RG G G ASP+E GA+P+ A + + P P PP
Sbjct: 6 QRGSKGGHGAASPSEKGAHPSGGADDVAKKPPPAPQQPPP 45
>AK223563-1|BAD97283.1| 602|Homo sapiens cytoskeleton-associated
protein 4 variant protein.
Length = 602
Score = 29.5 bits (63), Expect = 4.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 222 RRGRGWGLGRASPAESGAYPAHYAPNYS---PHRPANTPP 332
+RG G G ASP+E GA+P+ A + + P P PP
Sbjct: 6 QRGSKGGHGAASPSEKGAHPSGGADDVAKKPPPAPQQPPP 45
>AK098372-1|BAC05294.1| 243|Homo sapiens protein ( Homo sapiens
cDNA FLJ25506 fis, clone CBR05185. ).
Length = 243
Score = 28.7 bits (61), Expect = 8.0
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -1
Query: 336 CVGACWRVGAASS*ARSVP-GMRRIPRGTR 250
C G CWR G A+ R V G+R RG R
Sbjct: 31 CCGRCWRSGCAARPPRMVSIGLRGAVRGAR 60
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.314 0.133 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,221,521
Number of Sequences: 237096
Number of extensions: 651856
Number of successful extensions: 6136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6134
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 3043111070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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