Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1139X
         (408 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070862-1|AAL48484.2|  123|Drosophila melanogaster GM14851p pro...    31   0.44 
AE014296-610|AAF47745.1| 1521|Drosophila melanogaster CG11505-PA...    30   1.3  
AE014296-609|AAG22237.2| 1531|Drosophila melanogaster CG11505-PB...    30   1.3  
BT001775-1|AAN71530.1|  480|Drosophila melanogaster RH13835p pro...    28   4.1  
AY061199-1|AAL28747.1|  430|Drosophila melanogaster LD15527p pro...    28   4.1  
AE014297-3530|AAF56285.2|  457|Drosophila melanogaster CG5746-PB...    28   4.1  
AE014297-3529|AAF56284.2|  457|Drosophila melanogaster CG5746-PA...    28   4.1  
BT028851-1|ABI34232.2|  390|Drosophila melanogaster RT01125p pro...    27   7.2  
BT028819-1|ABI34200.2|  390|Drosophila melanogaster RT01025p pro...    27   7.2  
AE014134-3390|AAF53991.1|  390|Drosophila melanogaster CG8667-PA...    27   7.2  

>AY070862-1|AAL48484.2|  123|Drosophila melanogaster GM14851p
           protein.
          Length = 123

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 258 PAESGAYPAHYAPNYSPHRPANTPPH 335
           PA  G+ P H A  Y  HR    PPH
Sbjct: 41  PALGGSVPEHQADGYQCHRSGQVPPH 66


>AE014296-610|AAF47745.1| 1521|Drosophila melanogaster CG11505-PA,
            isoform A protein.
          Length = 1521

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
 Frame = +3

Query: 228  GRGWGLGRASPAE---SGAYPAHYAPNYSPHRPANTPPHTT 341
            G G G G+A        G    H APNY  H+P N P   T
Sbjct: 1158 GGGGGKGKARKDNRHPQGQNQPHMAPNYQQHQPRNPPVSPT 1198


>AE014296-609|AAG22237.2| 1531|Drosophila melanogaster CG11505-PB,
            isoform B protein.
          Length = 1531

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
 Frame = +3

Query: 228  GRGWGLGRASPAE---SGAYPAHYAPNYSPHRPANTPPHTT 341
            G G G G+A        G    H APNY  H+P N P   T
Sbjct: 1168 GGGGGKGKARKDNRHPQGQNQPHMAPNYQQHQPRNPPVSPT 1208


>BT001775-1|AAN71530.1|  480|Drosophila melanogaster RH13835p
           protein.
          Length = 480

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 228 GRGWGLGRASPAESGAYPAHYAPNYSPH 311
           G G G G +S +  G+ P+H+AP  S H
Sbjct: 310 GGGGGGGMSSQSSYGSPPSHHAPQQSHH 337


>AY061199-1|AAL28747.1|  430|Drosophila melanogaster LD15527p
           protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 228 GRGWGLGRASPAESGAYPAHYAPNYSPH 311
           G G G G +S +  G+ P+H+AP  S H
Sbjct: 260 GGGGGGGMSSQSSYGSPPSHHAPQQSHH 287


>AE014297-3530|AAF56285.2|  457|Drosophila melanogaster CG5746-PB,
           isoform B protein.
          Length = 457

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 228 GRGWGLGRASPAESGAYPAHYAPNYSPH 311
           G G G G +S +  G+ P+H+AP  S H
Sbjct: 287 GGGGGGGMSSQSSYGSPPSHHAPQQSHH 314


>AE014297-3529|AAF56284.2|  457|Drosophila melanogaster CG5746-PA,
           isoform A protein.
          Length = 457

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 228 GRGWGLGRASPAESGAYPAHYAPNYSPH 311
           G G G G +S +  G+ P+H+AP  S H
Sbjct: 287 GGGGGGGMSSQSSYGSPPSHHAPQQSHH 314


>BT028851-1|ABI34232.2|  390|Drosophila melanogaster RT01125p
           protein.
          Length = 390

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 210 SVCVRRGRG-WGLGRASPAESGAYPAHYAPNYSPHRPAN 323
           S C   G+G  G GR   A SGA P+  APN +    +N
Sbjct: 98  SGCSLGGQGPSGRGRVQQASSGACPSTIAPNSTSSNSSN 136


>BT028819-1|ABI34200.2|  390|Drosophila melanogaster RT01025p
           protein.
          Length = 390

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 210 SVCVRRGRG-WGLGRASPAESGAYPAHYAPNYSPHRPAN 323
           S C   G+G  G GR   A SGA P+  APN +    +N
Sbjct: 98  SGCSLGGQGPSGRGRVQQASSGACPSTIAPNSTSSNSSN 136


>AE014134-3390|AAF53991.1|  390|Drosophila melanogaster CG8667-PA
           protein.
          Length = 390

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 210 SVCVRRGRG-WGLGRASPAESGAYPAHYAPNYSPHRPAN 323
           S C   G+G  G GR   A SGA P+  APN +    +N
Sbjct: 98  SGCSLGGQGPSGRGRVQQASSGACPSTIAPNSTSSNSSN 136


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.314    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,154,511
Number of Sequences: 53049
Number of extensions: 201320
Number of successful extensions: 902
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1188481122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)