Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1139X
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    29   0.98 
AL110499-1|CAB57912.1|  325|Caenorhabditis elegans Hypothetical ...    28   2.3  
Z81526-5|CAB04262.1|  983|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AC024790-2|AAF60638.1|  220|Caenorhabditis elegans Ground-like (...    27   5.2  
AF000196-9|AAO61448.1|  395|Caenorhabditis elegans Hypothetical ...    26   9.1  
AF000196-8|AAL11096.1|  624|Caenorhabditis elegans Hypothetical ...    26   9.1  
AF000196-7|AAC24251.2|  706|Caenorhabditis elegans Hypothetical ...    26   9.1  

>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +3

Query: 222 RRGRGWGLGRASPAESGAYPAHYAPNYSPHRPANTPPH 335
           + G   G G   P   GAYP + AP   P  P   P H
Sbjct: 436 QHGAPGGSGAPPPGPPGAYPGNGAPGGPPGGPPQFPGH 473



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 112 TRHGAAGDSHTPPPGLP 62
           ++HGA G S  PPPG P
Sbjct: 435 SQHGAPGGSGAPPPGPP 451


>AL110499-1|CAB57912.1|  325|Caenorhabditis elegans Hypothetical
           protein Y62F5A.1a protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 219 VRRGRGWGLGRASPAESGAYPAHYAPNYSPHRPANTPPHTTWTTLRP 359
           +R+    G  + S A    Y  H  P YS  +P N   H+  T + P
Sbjct: 252 LRQQLSGGQPQTSQAHLPMYSHHQQPQYSHQQPMNPQHHSPMTMMAP 298


>Z81526-5|CAB04262.1|  983|Caenorhabditis elegans Hypothetical
           protein F33H2.1 protein.
          Length = 983

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 276 YPAHYAPNYSPHRPANTPPHTTWTTLRP 359
           + A +  +++PH P  TPP T    L P
Sbjct: 194 FEAQWEHDFTPHTPGETPPVTLKEELEP 221


>AC024790-2|AAF60638.1|  220|Caenorhabditis elegans Ground-like (grd
           related) protein 5 protein.
          Length = 220

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 237 WGLGRASPAESGAYPAHYAPNYSPHRPANTPP 332
           +G   A+PA   A PA +A   +P +P   PP
Sbjct: 76  FGSSYAAPAPFAAQPAQFAVQSAPPQPIVAPP 107


>AF000196-9|AAO61448.1|  395|Caenorhabditis elegans Hypothetical
           protein B0041.2c protein.
          Length = 395

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 231 RGWGLGRASPAESGAYPAHYAPN 299
           RGW  G  S   SG +P+H+  N
Sbjct: 77  RGWDEGSISGGGSGRHPSHHQSN 99


>AF000196-8|AAL11096.1|  624|Caenorhabditis elegans Hypothetical
           protein B0041.2b protein.
          Length = 624

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 231 RGWGLGRASPAESGAYPAHYAPN 299
           RGW  G  S   SG +P+H+  N
Sbjct: 306 RGWDEGSISGGGSGRHPSHHQSN 328


>AF000196-7|AAC24251.2|  706|Caenorhabditis elegans Hypothetical
           protein B0041.2a protein.
          Length = 706

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 231 RGWGLGRASPAESGAYPAHYAPN 299
           RGW  G  S   SG +P+H+  N
Sbjct: 388 RGWDEGSISGGGSGRHPSHHQSN 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,140,727
Number of Sequences: 27780
Number of extensions: 85421
Number of successful extensions: 292
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)