Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1139X
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   4.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.4  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   7.1  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.4  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
 Frame = +3

Query: 204 KWSVCVRR---GRGWGLGRASPAESGAYPAHY 290
           K   C+ R   GRGWG+      + G++   Y
Sbjct: 494 KMQFCIFRTANGRGWGVKTMKTIKKGSFVTQY 525


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 230 EGVGARARVPRGIRRIPGTL 289
           EG+G+ AR+ + I    GT+
Sbjct: 96  EGIGSLARILKTIENFKGTV 115


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 252 ASPAESGAYPAHYAPNYSPHRPANTPPHT 338
           ++P    +YPA     ++PH   + PP T
Sbjct: 445 STPLAHSSYPAAIQIGHTPHHHPH-PPET 472


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 237 WGLGRASPAESGAYPAHYAPN 299
           W L  A    +GAY  HY  N
Sbjct: 101 WVLLEAKYDPTGAYKQHYLQN 121


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 237 WGLGRASPAESGAYPAHYAPN 299
           W L  A    +GAY  HY  N
Sbjct: 101 WVLLEAKYDPTGAYKQHYLQN 121


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -1

Query: 291  RSVPGMRRIPRGTRARAPTPSPA*H 217
            RSV   R IP       P P P  H
Sbjct: 1843 RSVGSARNIPVSGSPEPPPPPPRNH 1867


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,143
Number of Sequences: 438
Number of extensions: 1130
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)