Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1139X
         (408 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    28   2.1  
At1g17620.1 68414.m02179 expressed protein                             28   2.8  
At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH) domain...    27   6.4  
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ...    27   6.4  
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR...    26   8.5  
At5g07770.1 68418.m00889 formin homology 2 domain-containing pro...    26   8.5  
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family...    26   8.5  
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family...    26   8.5  

>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 255 SPAESGAYPAHYAPNYSP-HRPANTPPH 335
           SPA + ++   +AP++SP H P+++P H
Sbjct: 232 SPAHTPSHSPAHAPSHSPAHAPSHSPAH 259



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 255 SPAESGAYPAHYAPNYSP-HRPANTPPHTTWTTLRP 359
           +P+ S A+   ++P ++P H PA++P H+  T   P
Sbjct: 244 APSHSPAHAPSHSPAHAPSHSPAHSPSHSPATPKSP 279



 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
 Frame = +3

Query: 255 SPAESGAYPAHYAPNYSP-----HRPANTPPHT 338
           SP+     P  ++P++SP     H PA+TP H+
Sbjct: 208 SPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHS 240



 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 255 SPAESGAYPAHYAPNYSP-HRPANTPPHT 338
           SP+ S A+   ++P ++P H PA+ P H+
Sbjct: 220 SPSHSPAHTPSHSPAHTPSHSPAHAPSHS 248



 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 255 SPAESGAYPAHYAPNYSP-HRPANTPPH 335
           SPA + ++   + P++SP H P+++P H
Sbjct: 224 SPAHTPSHSPAHTPSHSPAHAPSHSPAH 251



 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 255 SPAESGAYPAHYAPNYSP-HRPANTPPHT 338
           +P+ S A+   ++P ++P H PA+ P H+
Sbjct: 228 TPSHSPAHTPSHSPAHAPSHSPAHAPSHS 256


>At1g17620.1 68414.m02179 expressed protein
          Length = 264

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 243 LGRASPAESGAYPAHYAPNYSPHRPANTPP 332
           +G  +P  +  +PA+ A  Y+ +RPA  PP
Sbjct: 16  VGGGAPTTNPTFPANKAQLYNANRPAYRPP 45


>At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain;
           similar to Af10-protein - Avena fatua, EMBL:U80041
          Length = 1024

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 246 GRASPAESGAYPAHYAPNYSPHRPANTPPH 335
           G A PA S   P  Y P  S H P+ + PH
Sbjct: 618 GYAGPATS--QPPQYTPGVSSHPPSESFPH 645


>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
           PF00069: Protein kinase domain
          Length = 710

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 258 PAESGAYPAHYAPNYSPHRPANTPPHTTWTTLRP 359
           P  + + PA  AP  SP  P N PP  +   L P
Sbjct: 165 PGPATSPPAPSAPATSPPAPPNAPPRNSSHALPP 198


>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1193

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 230 EGVGARARVPRGIRRIPGTLR 292
           EG G +  +PRG+  +PG LR
Sbjct: 583 EGFGDKLSLPRGLNCLPGKLR 603


>At5g07770.1 68418.m00889 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 722

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 327 ACWRVGAASS*ARSVPGMRRIPRGTRARAPTPSP 226
           AC R+ A +   R V G   +PR  R  +P+P P
Sbjct: 609 ACCRIPAVNPPPRLVCGPYPLPRLVRVGSPSPPP 642


>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
           protein
          Length = 438

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 249 RASPAESGAYPAHYAPNYSPHRPANTPP 332
           +A P  SG YP      YSP  P N PP
Sbjct: 244 QARPQSSGGYPT-----YSPAPPGNQPP 266


>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
           protein
          Length = 496

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 249 RASPAESGAYPAHYAPNYSPHRPANTPP 332
           +A P  SG YP      YSP  P N PP
Sbjct: 302 QARPQSSGGYPT-----YSPAPPGNQPP 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,835,616
Number of Sequences: 28952
Number of extensions: 80535
Number of successful extensions: 256
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)