Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1138
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000519C17 Cluster: PREDICTED: similar to Methylosom...    44   0.005
UniRef50_UPI00015B5973 Cluster: PREDICTED: similar to MGC81186 p...    40   0.044
UniRef50_P54105 Cluster: Methylosome subunit pICln (Chloride con...    39   0.13 
UniRef50_UPI0001555F4F Cluster: PREDICTED: similar to chloride c...    37   0.54 
UniRef50_Q965E1 Cluster: ICln2; n=3; Caenorhabditis|Rep: ICln2 -...    34   2.9  
UniRef50_Q9LVA7 Cluster: Genomic DNA, chromosome 5, P1 clone:MMI...    33   8.8  

>UniRef50_UPI0000519C17 Cluster: PREDICTED: similar to Methylosome
           subunit pICln (Chloride conductance regulatory protein
           ICln) (I(Cln)) (Chloride channel, nucleotide sensitive
           1A) (Chloride ion current inducer protein) (ClCI); n=1;
           Apis mellifera|Rep: PREDICTED: similar to Methylosome
           subunit pICln (Chloride conductance regulatory protein
           ICln) (I(Cln)) (Chloride channel, nucleotide sensitive
           1A) (Chloride ion current inducer protein) (ClCI) - Apis
           mellifera
          Length = 207

 Score = 43.6 bits (98), Expect = 0.005
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
 Frame = +1

Query: 1   QELGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQRE----PSPALYMVLN 168
           +E+G  TLYITE+ + W    +  G      +L YP ISLHAI R+    P   LY++++
Sbjct: 28  REVGKGTLYITESLLSWVNYDTQQG-----FSLEYPHISLHAISRDEQVHPRQCLYIMVD 82

Query: 169 YELRLPELSQQAGS 210
            ++ LP++S    S
Sbjct: 83  AKVDLPDVSLSPAS 96



 Score = 38.3 bits (85), Expect = 0.18
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 255 ITQLRFIPENENELQAMYSAMCQGQELH 338
           IT++RF P+N N L+AM+ AM Q Q LH
Sbjct: 111 ITEMRFAPDNTNNLEAMFQAMNQCQALH 138


>UniRef50_UPI00015B5973 Cluster: PREDICTED: similar to MGC81186
           protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
           similar to MGC81186 protein - Nasonia vitripennis
          Length = 222

 Score = 40.3 bits (90), Expect = 0.044
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
 Frame = +1

Query: 1   QELGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQRE----PSPALYMVLN 168
           +E+G  TLYITE+ + W    +  G      +L YP ISLHAI R+    P   LY++++
Sbjct: 28  REVGKGTLYITESLLSWVNNDTRQG-----FSLEYPHISLHAISRDEQVHPRQCLYVMVD 82

Query: 169 YELRLPE 189
            ++  P+
Sbjct: 83  AKVDFPD 89



 Score = 36.3 bits (80), Expect = 0.72
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 255 ITQLRFIPENENELQAMYSAMCQGQELH 338
           IT++RF P+N N L AM+ AM + Q LH
Sbjct: 126 ITEMRFAPDNTNSLDAMFQAMNECQALH 153


>UniRef50_P54105 Cluster: Methylosome subunit pICln (Chloride
           conductance regulatory protein ICln) (I(Cln)); n=40;
           Euteleostomi|Rep: Methylosome subunit pICln (Chloride
           conductance regulatory protein ICln) (I(Cln)) - Homo
           sapiens (Human)
          Length = 237

 Score = 38.7 bits (86), Expect = 0.13
 Identities = 14/28 (50%), Positives = 23/28 (82%)
 Frame = +3

Query: 255 ITQLRFIPENENELQAMYSAMCQGQELH 338
           IT+ RF+P +++ L+AM++AMC+ Q LH
Sbjct: 109 ITEFRFVPSDKSALEAMFTAMCECQALH 136



 Score = 37.5 bits (83), Expect = 0.31
 Identities = 23/49 (46%), Positives = 29/49 (59%)
 Frame = +1

Query: 7   LGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPSPAL 153
           LGT TLYI E+ + W  G S  G      +L YP+ISLHA+ R+ S  L
Sbjct: 32  LGTGTLYIAESRLSWLDG-SGLG-----FSLEYPTISLHALSRDRSDCL 74


>UniRef50_UPI0001555F4F Cluster: PREDICTED: similar to chloride
           channel, partial; n=1; Ornithorhynchus anatinus|Rep:
           PREDICTED: similar to chloride channel, partial -
           Ornithorhynchus anatinus
          Length = 278

 Score = 36.7 bits (81), Expect = 0.54
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +3

Query: 255 ITQLRFIPENENELQAMYSAMCQGQELH 338
           I + RF+P + + L+AM+SAMC+ Q LH
Sbjct: 117 IAEFRFVPGDRSALEAMFSAMCECQALH 144


>UniRef50_Q965E1 Cluster: ICln2; n=3; Caenorhabditis|Rep: ICln2 -
           Caenorhabditis elegans
          Length = 225

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +1

Query: 7   LGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPS 144
           LG  TLYIT++ VIW    S +G      ++ YP+I LHAI  + S
Sbjct: 29  LGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVLHAISTDVS 70


>UniRef50_Q9LVA7 Cluster: Genomic DNA, chromosome 5, P1 clone:MMI9;
           n=3; Magnoliophyta|Rep: Genomic DNA, chromosome 5, P1
           clone:MMI9 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 229

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +1

Query: 19  TLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREP----SPALYMVLNYE 174
           TLYIT   +IW   V  +   A  ++ L  SISLHA+ R+P    SP +Y  +  E
Sbjct: 50  TLYITSRKLIWLSDVDMAKGYA--VDFL--SISLHAVSRDPEAYSSPCIYTQIEVE 101


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,000,719
Number of Sequences: 1657284
Number of extensions: 9883311
Number of successful extensions: 27291
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27279
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)