Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1138
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    28   1.5  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    27   2.6  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.9  

>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -3

Query: 579 SNNSFVTDRVDWTTSSRAC--LHLL 511
           S NSF+T RV+W   S A   LHLL
Sbjct: 841 SKNSFMTSRVNWAIQSSAVDYLHLL 865


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 40  NVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPSPALYM-VLNYELRLPELSQQAG 207
           N++       SG P+   N L  + S+ + ++EPS  L++  L++E    +L +  G
Sbjct: 193 NILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFG 249


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 487 VTATTRTCQQVKTGARASRPVDTICNKTVVRVTF*FLIINA 609
           V + T T Q  ++    + PVD   NK   +V+  F++IN+
Sbjct: 56  VESVTETFQSNRSSLVPTYPVDENANKLPPKVSIAFILINS 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,665
Number of Sequences: 5004
Number of extensions: 37967
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)