Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1138
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0264 - 21785450-21786928                                         29   3.5  
02_02_0419 - 10009686-10012568                                         29   4.7  
06_01_0900 + 6926600-6927202                                           24   5.9  
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597...    28   8.1  

>11_06_0264 - 21785450-21786928
          Length = 492

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 52  GGGVSPSGNPAPTINLLYPSISLHAIQREPSPALYMVL 165
           GGG + S +P+P    +  S S H     P P  Y+ +
Sbjct: 299 GGGAASSSSPSPVARTVLSSPSPHQYSSGPKPTQYLAV 336


>02_02_0419 - 10009686-10012568
          Length = 960

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +1

Query: 16  ATLYITENNVIWGGGVSPSGNP---APTINLLYPSISLHAIQREPSPALYMVLNYELRLP 186
           A L +++NN+I G GVSPS  P       +L Y ++S   +  E  P L  +    LR  
Sbjct: 116 AYLDLSQNNLIGGDGVSPSPLPRFLGSLCDLRYLNLSFTGLAGEIPPQLGNLT--RLRQL 173

Query: 187 ELSQQAG 207
           +LS   G
Sbjct: 174 DLSSNVG 180


>06_01_0900 + 6926600-6927202
          Length = 200

 Score = 23.8 bits (49), Expect(2) = 5.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 381 PCMGHHPRPHQPDP 340
           P + HHP P QP P
Sbjct: 175 PPLFHHPPPQQPHP 188



 Score = 23.0 bits (47), Expect(2) = 5.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 366 HPRPHQPDPDA 334
           HP PH P P A
Sbjct: 187 HPHPHPPSPSA 197


>03_02_0155 -
           5974118-5974173,5974242-5974314,5974393-5974500,
           5975189-5976914,5977065-5977620,5978008-5978485
          Length = 998

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 551 STGRLARAPVFTCWQVRVVAVTGRGAEPHASQRGG 447
           S G      V TC   + VA +  G++PH  QR G
Sbjct: 451 SFGPHGHGAVLTCGPSQSVASSANGSDPHKMQRSG 485


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,087,724
Number of Sequences: 37544
Number of extensions: 285912
Number of successful extensions: 849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)