Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1138
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68270-13|CAD21675.1|  225|Caenorhabditis elegans Hypothetical p...    34   0.084
Z68270-12|CAA92573.1|  205|Caenorhabditis elegans Hypothetical p...    34   0.084
Z68213-7|CAD21589.1|  225|Caenorhabditis elegans Hypothetical pr...    34   0.084
Z68213-6|CAA92442.1|  205|Caenorhabditis elegans Hypothetical pr...    34   0.084
AF202932-1|AAK69382.1|  225|Caenorhabditis elegans ICln2 protein.      34   0.084
AF202931-1|AAK69381.1|  205|Caenorhabditis elegans ICln1 protein.      34   0.084

>Z68270-13|CAD21675.1|  225|Caenorhabditis elegans Hypothetical
           protein C01F6.8b protein.
          Length = 225

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +1

Query: 7   LGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPS 144
           LG  TLYIT++ VIW    S +G      ++ YP+I LHAI  + S
Sbjct: 29  LGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVLHAISTDVS 70


>Z68270-12|CAA92573.1|  205|Caenorhabditis elegans Hypothetical
           protein C01F6.8a protein.
          Length = 205

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +1

Query: 7   LGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPS 144
           LG  TLYIT++ VIW    S +G      ++ YP+I LHAI  + S
Sbjct: 29  LGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVLHAISTDVS 70


>Z68213-7|CAD21589.1|  225|Caenorhabditis elegans Hypothetical
           protein C01F6.8b protein.
          Length = 225

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +1

Query: 7   LGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPS 144
           LG  TLYIT++ VIW    S +G      ++ YP+I LHAI  + S
Sbjct: 29  LGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVLHAISTDVS 70


>Z68213-6|CAA92442.1|  205|Caenorhabditis elegans Hypothetical
           protein C01F6.8a protein.
          Length = 205

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +1

Query: 7   LGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPS 144
           LG  TLYIT++ VIW    S +G      ++ YP+I LHAI  + S
Sbjct: 29  LGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVLHAISTDVS 70


>AF202932-1|AAK69382.1|  225|Caenorhabditis elegans ICln2 protein.
          Length = 225

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +1

Query: 7   LGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPS 144
           LG  TLYIT++ VIW    S +G      ++ YP+I LHAI  + S
Sbjct: 29  LGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVLHAISTDVS 70


>AF202931-1|AAK69381.1|  205|Caenorhabditis elegans ICln1 protein.
          Length = 205

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +1

Query: 7   LGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPS 144
           LG  TLYIT++ VIW    S +G      ++ YP+I LHAI  + S
Sbjct: 29  LGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVLHAISTDVS 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,293,723
Number of Sequences: 27780
Number of extensions: 230155
Number of successful extensions: 601
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)