Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1138
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62290.1 68418.m07820 nucleotide-sensitive chloride conductan...    33   0.24 
At1g14780.1 68414.m01767 expressed protein                             30   1.7  

>At5g62290.1 68418.m07820 nucleotide-sensitive chloride conductance
           regulator (ICln) family protein contains PF03517:
           Nucleotide-sensitive chloride conductance regulator
           (ICln)
          Length = 229

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +1

Query: 19  TLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREP----SPALYMVLNYE 174
           TLYIT   +IW   V  +   A  ++ L  SISLHA+ R+P    SP +Y  +  E
Sbjct: 50  TLYITSRKLIWLSDVDMAKGYA--VDFL--SISLHAVSRDPEAYSSPCIYTQIEVE 101


>At1g14780.1 68414.m01767 expressed protein
          Length = 627

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 34  ENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREP--SPALYMVLNYELRL 183
           +N V+   GV P G P P  N +   + L  + R P  SP  ++V    L L
Sbjct: 553 KNEVVLDSGVFPGGPPVPANNKIVKFVDLSQLCRGPQHSPGHWLVTGVRLYL 604


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,431,365
Number of Sequences: 28952
Number of extensions: 208709
Number of successful extensions: 495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)