Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1137
         (733 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   1.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   1.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   1.9  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    23   3.4  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   4.4  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 395 RLANVSGKTLGAPAPGMEP 339
           R  +V+G + G  APGMEP
Sbjct: 215 RKVHVAGASNGTFAPGMEP 233


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 395 RLANVSGKTLGAPAPGMEP 339
           R  +V+G + G  APGMEP
Sbjct: 215 RKVHVAGASNGTFAPGMEP 233


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 395 RLANVSGKTLGAPAPGMEP 339
           R  +V+G + G  APGMEP
Sbjct: 215 RKVHVAGASNGTFAPGMEP 233


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 404 HCFRLANVSGKTLGAPAPGMEP 339
           H F L + S   LG+P+ G  P
Sbjct: 259 HAFTLVDASQHDLGSPSSGPAP 280


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 135 ILVLCLDDIFVALIVTHY 82
           ILVLCL  + + L V H+
Sbjct: 5   ILVLCLATLALGLFVPHF 22


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,002
Number of Sequences: 336
Number of extensions: 3638
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)