Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1137
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    31   0.17 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.68 

>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +3

Query: 168 IQQIDVSAEILDNVQTHLDPYDIDQDY*VS*VH*NTQLCCLNQYRRKGEIRSA-RDQHWL 344
           I  IDV+ E L N Q HL PY +        +  N ++ CL Q R K  I S   D    
Sbjct: 458 IDCIDVTREFLKNGQLHLIPYTL--------ILFNDRI-CLVQRRSKSSIASTILDLRKQ 508

Query: 345 HPR-SRSTQRLPRYVGKSKAMEIVLT 419
           +PR S S ++  +Y+G +    + LT
Sbjct: 509 NPRNSYSKEKRAQYIGSNMNEAVELT 534


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 612 FSTAS--PI*GWSRKLGSQLVWPTSQLTGSGFRSFQPLDGSSKSFPL 478
           F+T S  P    S  L +  V PTS  T SGF +   L  SS S PL
Sbjct: 687 FNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSVSTPL 733



 Score = 28.7 bits (61), Expect = 0.90
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -2

Query: 582 SRKLGSQLVWPTSQLTGSGFRSFQPLDGSSKSFPL 478
           S  L +  V PTS  T SGF +   L  SS S PL
Sbjct: 606 STPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPL 640



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 612 FSTAS--PI*GWSRKLGSQLVWPTSQLTGSGFRSFQPLDGSSKSFP 481
           F+T S  P    S  L +  V PTS  T SGF +   L  SS S P
Sbjct: 625 FNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTP 670



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 612 FSTAS--PI*GWSRKLGSQLVWPTSQLTGSGFRSFQPLDGSSKSFPL 478
           F+T S  P    S    +  + PTS  T SGF +   L  SS S PL
Sbjct: 656 FNTTSGLPTSSASTPSSNSSIVPTSTFTSSGFNTTSGLPTSSASTPL 702


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,335
Number of Sequences: 5004
Number of extensions: 64278
Number of successful extensions: 172
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)