Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1137
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0163 + 26400486-26400621,26401477-26401646,26402623-264027... 69 3e-12
02_05_0164 + 26405052-26405208,26405304-26405473,26406278-264063... 65 6e-11
01_06_0153 - 27044553-27044669,27044842-27044964,27045066-270451... 53 2e-07
03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798 38 0.006
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 38 0.006
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 37 0.014
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 37 0.014
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 37 0.014
02_05_0267 - 27284781-27284957,27285082-27285126,27285858-272859... 30 2.2
02_05_0248 + 27145459-27145551,27145824-27145952,27146030-271466... 29 3.8
01_05_0719 + 24580765-24581090,24581285-24581401,24582739-245828... 29 3.8
12_02_1233 + 27224219-27225607 28 6.6
10_08_0917 - 21550332-21550685,21550726-21550765,21551766-215517... 28 6.6
03_02_0533 - 9263910-9264211,9264564-9264706,9265134-9265219 28 6.6
01_07_0023 + 40556545-40556629,40558063-40558253 28 6.6
07_03_0869 - 22168805-22169701 28 8.8
07_01_0113 + 840866-841574,841687-842210,842391-842840,843541-84... 28 8.8
>02_05_0163 +
26400486-26400621,26401477-26401646,26402623-26402713,
26402822-26402873,26403462-26403565,26403648-26403724,
26403890-26404069
Length = 269
Score = 69.3 bits (162), Expect = 3e-12
Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +3
Query: 348 PRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPV-ENF*KNHQAAERIG 524
P + TQRLPR VG+S+A E++ TG +A EA MGL + P E K + A I
Sbjct: 149 PGAGGTQRLPRIVGRSRAKEMIFTGRRCNATEAVMMGLANYCVPAGEAHEKALELAREIA 208
Query: 525 THSPLIVKLAKQAVNQAYETT-LKSGLQLRSPLLWNFA-TEDRKEGMTAFVER 677
PL +++AK+A++Q + + S L + TEDR EG+ AF ER
Sbjct: 209 QKGPLGIRMAKKAIDQGMQAADMPSALAVEGECYEQLLHTEDRLEGLAAFAER 261
>02_05_0164 +
26405052-26405208,26405304-26405473,26406278-26406352,
26406570-26406660,26406768-26406848,26407192-26407353,
26407425-26407501,26407670-26407846
Length = 329
Score = 64.9 bits (151), Expect = 6e-11
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 22/130 (16%)
Frame = +3
Query: 354 SRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKM--------------------GLVSKV 473
S TQRLPR VGKS+A E++ TG FDA EA M G+V+
Sbjct: 192 SGGTQRLPRIVGKSRAKELIFTGRRFDAVEAVTMGKVGLAPSFLRGVLLHFISTGVVNYC 251
Query: 474 FPV-ENF*KNHQAAERIGTHSPLIVKLAKQAVNQAYETTLKSGLQLRSPLLWN-FATEDR 647
P E + + + A+ I PL +++AK+A+NQ E L +GL + T+DR
Sbjct: 252 VPAGEAYKRALELAQEINQKGPLAIRMAKKAINQGMEVDLSAGLAVEEECYEQVLHTQDR 311
Query: 648 KEGMTAFVER 677
EG+ AF E+
Sbjct: 312 LEGLAAFAEK 321
>01_06_0153 -
27044553-27044669,27044842-27044964,27045066-27045161,
27045323-27045370,27046360-27046458,27046554-27046592,
27047032-27047133,27047225-27047347,27047535-27047783
Length = 331
Score = 53.2 bits (122), Expect = 2e-07
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Frame = +3
Query: 363 TQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVENF*KNH-QAAERIGTHSPL 539
T + R VG KA E+ F+ A EA++MGLV+ V P+ + + + +I +SP
Sbjct: 214 TSIMSRLVGPKKAREMWFLSRFYTADEADRMGLVNVVVPLADLERETVKWCRKILRNSPT 273
Query: 540 IVKLAKQAVNQAYETTLKSGLQLR--SPLLWNFATEDRKEGMTAFVER 677
+++ K A+N A + +GLQ + L + TE+ KEG A++ER
Sbjct: 274 AIRVLKSALNAADDG--HAGLQELGGNATLIFYGTEEAKEGKNAYMER 319
>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
Length = 268
Score = 38.3 bits (85), Expect = 0.006
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Frame = +3
Query: 363 TQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVF-PVENF*KNHQAAERIGTHSPL 539
+Q+L R +G ++A E+ LT A AEK GLV+ + + K + E I ++
Sbjct: 151 SQKLSRVIGPNRAREVSLTCMPITAEMAEKWGLVNHIVDDTQVLSKAIEVCEAIARNNRN 210
Query: 540 IVKLAKQAVNQAYETTLKSGLQL---RSPLLWNFATEDRKEGMTAFVE 674
+V L K +N + L+ L R+ +N T+++ M F++
Sbjct: 211 LVVLYKSVINDGLQLDLEHARALEKERAHDYYNGMTKEQFASMQKFIQ 258
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 348 PRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVENF*KNHQ--AAERI 521
P TQRLPR VG KA+E++L F A E ++ GLV + + K + A E
Sbjct: 143 PGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLVDALCSPDELIKMSRLWALEIA 202
Query: 522 GTHSPLIVKLAK 557
P I LA+
Sbjct: 203 NYRKPWIRSLAR 214
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 280 CVV*ISTGEKAKFGQPEINIGSIPGAGAPSVFP 378
C IST E A+ G PE+ +G IPG G P
Sbjct: 121 CHARISTPE-AQLGLPELTLGIIPGFGGTQRLP 152
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 37.1 bits (82), Expect = 0.014
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = +3
Query: 348 PRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKV 473
P TQRLPR VG KA+E++L EA K GLV V
Sbjct: 145 PGLGGTQRLPRLVGLPKALEMLLMSKPLKGVEAHKFGLVDAV 186
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 348 PRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKV 473
P TQRLPR VG +KA+E++L A EA ++ L+ +
Sbjct: 144 PAFGGTQRLPRLVGLTKALEMMLMSKPIKAEEAHQLALIDAI 185
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 37.1 bits (82), Expect = 0.014
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3
Query: 348 PRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVEN 488
P TQRLPR VG +KA+E++L EA ++GLV + ++
Sbjct: 148 PGFGGTQRLPRLVGLTKALEMMLLSKPIKGAEAHQLGLVDSLVSADD 194
>02_05_0267 -
27284781-27284957,27285082-27285126,27285858-27285923,
27286043-27286114,27286225-27286350,27286563-27287217,
27287313-27287521
Length = 449
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 233 YRSRLLGILSSLKYTAVLFKSVPAKRRNSVSPRST 337
YR L +L+S T +F+ VPA +V+P T
Sbjct: 79 YRENFLDLLASKNVTPEMFEEVPASEHYNVAPAGT 113
>02_05_0248 +
27145459-27145551,27145824-27145952,27146030-27146695,
27147170-27147756,27147882-27148225,27148808-27148815
Length = 608
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 473 IPSGKLLEEPSSG*KDRNPLPVNCEVGQTSCEPSLRDHPQIGLAVEKSTSMELCY 637
I S + ++ +S K + +P+NC V C+ +R P +G+ E S+E Y
Sbjct: 52 ITSPVIEDDNTSTPKKISRIPLNCSVFTPECDDKIR--PAVGMTFEDIASVEKFY 104
>01_05_0719 +
24580765-24581090,24581285-24581401,24582739-24582866,
24582938-24583036,24583126-24583284,24584113-24584199,
24584324-24584415,24584570-24584644,24585257-24585424
Length = 416
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 363 CSGSGDGANVDLGLTEFRLFAGTDLN 286
C G +N+ LGL FRL GTDL+
Sbjct: 104 CGGWTRSSNLQLGLMLFRLLIGTDLS 129
>12_02_1233 + 27224219-27225607
Length = 462
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 330 DQHWLHPRSRSTQRLPRYVGKSKAMEIVLTG 422
D H ++P +R RLP Y +S +I+L G
Sbjct: 108 DHHVVNPATRQWTRLPPYPPESPGSDIILDG 138
>10_08_0917 -
21550332-21550685,21550726-21550765,21551766-21551767,
21552094-21552633
Length = 311
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -2
Query: 375 EDAGCSGSGDGANVDLGLTEFRLFAGTDLNNTAVYFNELKIPNSLD 238
E+ G G GA GL EF+ F D ++ A FN+ P D
Sbjct: 60 EETAVEGDG-GAQPAAGLQEFQFFGHDDHDSVAWLFNDPAPPGGTD 104
>03_02_0533 - 9263910-9264211,9264564-9264706,9265134-9265219
Length = 176
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 569 PSLRDHPQIGLAVEKSTSMELCYGGPQR 652
P LR HP GLA K+T GG +R
Sbjct: 114 PRLRSHPCAGLAPSKATGRTTISGGDRR 141
>01_07_0023 + 40556545-40556629,40558063-40558253
Length = 91
Score = 28.3 bits (60), Expect = 6.6
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Frame = +3
Query: 441 EAEKMGLVSKVFPVENF*KNHQA--AERIGTHSPLIVKLAKQAVNQAYETTLKSGLQLRS 614
EA++MGLV++VF + A A+ I S V K + ++ + T++ GL+
Sbjct: 2 EAKEMGLVTRVFNSKQELDAGVAKIAKEISEKSAWAVMGTKAVLLRSRDITVEQGLE--H 59
Query: 615 PLLWNFA---TEDRKEGMTAFVER 677
WN A + D +E + AF+E+
Sbjct: 60 VATWNAAMLRSNDLEEAIQAFLEK 83
>07_03_0869 - 22168805-22169701
Length = 298
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 238 SISYGSKCVCTLSRISADTSICWMRINYFLDHS 140
++ G V ++ AD +CW +I+Y L++S
Sbjct: 213 AVEIGWDSVAYITSTDADRLVCWGQISYMLEYS 245
>07_01_0113 +
840866-841574,841687-842210,842391-842840,843541-843699
Length = 613
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 573 LGSQLVWPTSQLTGSGFRSFQPLDGSSKS 487
+ + W S LTG + FQP G+S S
Sbjct: 376 ISGAIPWHLSNLTGMTMKGFQPFSGASMS 404
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,644,821
Number of Sequences: 37544
Number of extensions: 406490
Number of successful extensions: 988
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -