Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1137
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   4e-17
SB_31954| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   4e-06
SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)                   41   0.001
SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.004
SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)                      33   0.24 
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)                 29   3.9  
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_14511| Best HMM Match : Keratin_B2 (HMM E-Value=2.2)                28   9.0  

>SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 60/136 (44%), Positives = 79/136 (58%), Gaps = 20/136 (14%)
 Frame = +3

Query: 348 PRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVENF*KNH-QAAERIG 524
           P +  TQRL R VGKS AME+VLTG+  +A  A K GLVSKVFP ++   N  + AE+I 
Sbjct: 175 PGAGGTQRLTRAVGKSLAMEMVLTGDPINADHALKAGLVSKVFPADDLVPNAIKTAEKIA 234

Query: 525 THSPLIVKLAKQAVNQ-----------------AYETTLKSGLQLRSPLL-WNFATEDRK 650
             S L V +AK+ +N                  AYE TL+ GL++   +    FA +DRK
Sbjct: 235 GLSKLSVGIAKECLNYGKCQKLSVGITKECLNFAYEMTLEEGLKVEKRMFHTTFALDDRK 294

Query: 651 EGMTAFVE-RDHEFQE 695
           EGMTAF+E R  EF++
Sbjct: 295 EGMTAFIEKRKPEFKD 310



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = +1

Query: 292 ISTGEKAKFGQPEINIGSIPGAG 360
           I   +KAKFGQPEI IG+IPGAG
Sbjct: 156 IYASDKAKFGQPEILIGTIPGAG 178


>SB_31954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
 Frame = +3

Query: 372 LPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVENF*KN-HQAAERIGTHSPLIVK 548
           L R V +  AME++LTG    A EA + GLVS+V P +      ++ + +I   S  +V 
Sbjct: 133 LARAVPRKVAMEMLLTGRPITAGEALRHGLVSRVVPEDQLENEVNRISSKIAEVSRPVVA 192

Query: 549 LAKQA-VNQAYETTLKSGLQLRSPLLWNFATEDRKEGMTAFVER 677
           + K    +Q  +T  ++     + ++ N   ED KEG+ AFVE+
Sbjct: 193 MGKACFYSQVAQTRDQAYKYAENVMIENLKMEDGKEGIKAFVEK 236


>SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)
          Length = 230

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 20/41 (48%), Positives = 28/41 (68%)
 Frame = +3

Query: 342 LHPRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLV 464
           L P +  TQRLPR VG   +++++LTG    A +A+KMGLV
Sbjct: 47  LLPGAGGTQRLPRLVGLPDSLDMMLTGKNIRAQKAKKMGLV 87


>SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 16/37 (43%), Positives = 27/37 (72%)
 Frame = +3

Query: 369 RLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFP 479
           RLP  +G S+A+++++TG    A EA ++GLV++V P
Sbjct: 171 RLPYLIGLSRALDLIMTGRAVKAQEAIEIGLVNRVVP 207


>SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 790

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
 Frame = -2

Query: 519 SFQPLD-GSSKSFPLGILY*QDPFSRLHEHQRSFLSTRSPLLSTCQRIWEDAGCSGSGDG 343
           S Q +D G     PL +   ++  S ++++  + LS  +P +S  + I ++   S   + 
Sbjct: 148 SLQAVDNGPDTLSPLDLSIREEGRSSMYDNIATGLSLSTPSISQIKDIEQEYSSSQKSNL 207

Query: 342 ANVDLGLTEFRLFAGTDLNNTAVYFNELKIPNSLDRYHTDPNV 214
           AN DLGL  +   +  D  +    F +  +P  L    T P V
Sbjct: 208 ANSDLGLESYSGASSGDELSDVDRFEDEDVPGELVDLKTSPRV 250


>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1683

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 372  LPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVE 485
            L   VG+++A +I+     FDA +A  +GL+ KV  V+
Sbjct: 1565 LSNAVGRNRAEKIIYNAQVFDADDAAGIGLIDKVTHVD 1602


>SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
          Length = 666

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 223 SKCVCTLSRISADTSICWMRINYFLDHSRHTRIMFRRY 110
           S  V  +  + A +S  WM I YFL ++R  RI  RR+
Sbjct: 260 SPSVTFIPHLIAKSSFLWMPIIYFLLYNRGLRIFRRRH 297


>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1892

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 99  LIVTHYIYSLYTSTVF 52
           L++THYIYSLY   VF
Sbjct: 785 LMMTHYIYSLYDKAVF 800


>SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +3

Query: 312  EIRSARDQHWLHPRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFP 479
            EI+  + +  L P      RL + VG+ KAMEI+L        E+   GLV    P
Sbjct: 1016 EIKFVQARMGLTPGWGGGARLVQLVGRQKAMEILLQCKSMKLEESLMCGLVDGELP 1071


>SB_14511| Best HMM Match : Keratin_B2 (HMM E-Value=2.2)
          Length = 276

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -2

Query: 447 RLHEHQRSFLSTRS---PLLSTCQRI 379
           R+H   R F++  S   PLLSTCQR+
Sbjct: 182 RVHSSMRPFVNASSRQLPLLSTCQRV 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,850,360
Number of Sequences: 59808
Number of extensions: 472897
Number of successful extensions: 1191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)