Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1137
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27079-6|CAA81594.1|  288|Caenorhabditis elegans Hypothetical pr...   105   3e-23
AL132876-4|CAC48118.1|  256|Caenorhabditis elegans Hypothetical ...   105   4e-23
AF045646-15|AAK29838.1|  284|Caenorhabditis elegans Enoyl-coa hy...    58   8e-09
Z46240-4|CAA86314.1|  255|Caenorhabditis elegans Hypothetical pr...    48   5e-06
U50307-3|AAA92304.1|  258|Caenorhabditis elegans Enoyl-coa hydra...    38   0.007
AF000263-3|AAL77185.1|  697|Caenorhabditis elegans Hypothetical ...    36   0.039
AF000263-2|AAK21464.1|  755|Caenorhabditis elegans Hypothetical ...    36   0.039
AF000263-1|AAK21462.1|  781|Caenorhabditis elegans Hypothetical ...    36   0.039
Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical pr...    34   0.090
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ...    28   5.9  
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chlor...    28   7.8  
L11247-9|AAK84522.2|  639|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo...    28   7.8  

>Z27079-6|CAA81594.1|  288|Caenorhabditis elegans Hypothetical
           protein T05G5.6 protein.
          Length = 288

 Score =  105 bits (252), Expect = 3e-23
 Identities = 57/112 (50%), Positives = 74/112 (66%), Gaps = 2/112 (1%)
 Frame = +3

Query: 348 PRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVEN-F*KNHQAAERIG 524
           P +  TQR  R  GKS AME+ LTGN   A EA++ G+VSK+FP +    +  +  E+I 
Sbjct: 169 PGAGGTQRWARAAGKSFAMEVCLTGNHVTAQEAKEHGIVSKIFPADQVVGEAVKLGEKIA 228

Query: 525 THSPLIVKLAKQAVNQAYETTLKSGLQLRSPLLW-NFATEDRKEGMTAFVER 677
             SPLIV++AK+AVN+AYE TL+ GL     L    FAT+DRKEGMTAF E+
Sbjct: 229 DQSPLIVQMAKEAVNKAYELTLQEGLHFERRLFHATFATKDRKEGMTAFAEK 280



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +1

Query: 292 ISTGEKAKFGQPEINIGSIPGAG 360
           I  GEKA+FGQPEINIG+IPGAG
Sbjct: 150 IYAGEKARFGQPEINIGTIPGAG 172


>AL132876-4|CAC48118.1|  256|Caenorhabditis elegans Hypothetical
           protein Y105E8A.4 protein.
          Length = 256

 Score =  105 bits (251), Expect = 4e-23
 Identities = 57/112 (50%), Positives = 76/112 (67%), Gaps = 2/112 (1%)
 Frame = +3

Query: 348 PRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVENF-*KNHQAAERIG 524
           P    TQR PRYV KS AMEI L+G+   A EA++ GLVSKVFPV+    +    A+RI 
Sbjct: 137 PGLGGTQRWPRYVSKSVAMEICLSGDRLGAQEAKEDGLVSKVFPVQQLVGEAVLLADRIA 196

Query: 525 THSPLIVKLAKQAVNQAYETTLKSGLQLRSPLLWN-FATEDRKEGMTAFVER 677
            +SPLIVK  K+++N AY+T+L  GL++   L  + FAT DR+EGM+AF E+
Sbjct: 197 KNSPLIVKTVKRSLNSAYQTSLNQGLEMEKQLFQSTFATNDRREGMSAFAEK 248



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 292 ISTGEKAKFGQPEINIGSIPGAGAPSVFP 378
           +  GE A FGQPEI IG+IPG G    +P
Sbjct: 118 VYAGENAIFGQPEITIGTIPGLGGTQRWP 146


>AF045646-15|AAK29838.1|  284|Caenorhabditis elegans Enoyl-coa
           hydratase protein 5 protein.
          Length = 284

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 33/109 (30%), Positives = 56/109 (51%)
 Frame = +3

Query: 282 CCLNQYRRKGEIRSARDQHWLHPRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGL 461
           C +    +K ++     +  L P +  +QRL R VG +KA E++ T    +  +A K+G+
Sbjct: 147 CDIRVASQKAKMGLVETKWALIPGAGGSQRLYRIVGVAKAKELIYTAEVLNGADAAKLGV 206

Query: 462 VSKVFPVENF*KNHQAAERIGTHSPLIVKLAKQAVNQAYETTLKSGLQL 608
           V+ V       K+ + A +I    P+ VKLAK A+N   +T + S L +
Sbjct: 207 VNHVVEANPIEKSLEIARKIIPRGPIAVKLAKLAINLGSQTDITSALSV 255


>Z46240-4|CAA86314.1|  255|Caenorhabditis elegans Hypothetical
           protein B0272.4 protein.
          Length = 255

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
 Frame = +3

Query: 348 PRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVENF*KN-HQAAERIG 524
           P + S+  LPR +G  KA  +++    F AHEA   GLV+++ P   F K+  +  +R  
Sbjct: 139 PEACSSYTLPRIMGHQKAAALMMFSEKFTAHEAHIAGLVTQILPAATFEKDAKKIIDRYS 198

Query: 525 THSPLIVKLAKQ 560
             SP+ +K+AK+
Sbjct: 199 KLSPITMKVAKE 210


>U50307-3|AAA92304.1|  258|Caenorhabditis elegans Enoyl-coa
           hydratase protein 3 protein.
          Length = 258

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 16/37 (43%), Positives = 26/37 (70%)
 Frame = +3

Query: 363 TQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKV 473
           T RLPR +G  +A++++LTG    A EA + GLV+++
Sbjct: 147 TVRLPRVIGLGRALDMILTGREVGAQEALQWGLVNRI 183


>AF000263-3|AAL77185.1|  697|Caenorhabditis elegans Hypothetical
           protein T08B2.7c protein.
          Length = 697

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +3

Query: 342 LHPRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKV 473
           L P +  TQRLP+       +++ LTG    A +A+K+G+V +V
Sbjct: 196 LLPGAGGTQRLPKLTTVQNVLDLTLTGKKIKADKAKKIGIVDRV 239


>AF000263-2|AAK21464.1|  755|Caenorhabditis elegans Hypothetical
           protein T08B2.7b protein.
          Length = 755

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +3

Query: 342 LHPRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKV 473
           L P +  TQRLP+       +++ LTG    A +A+K+G+V +V
Sbjct: 170 LLPGAGGTQRLPKLTTVQNVLDLTLTGKKIKADKAKKIGIVDRV 213


>AF000263-1|AAK21462.1|  781|Caenorhabditis elegans Hypothetical
           protein T08B2.7a protein.
          Length = 781

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +3

Query: 342 LHPRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKV 473
           L P +  TQRLP+       +++ LTG    A +A+K+G+V +V
Sbjct: 196 LLPGAGGTQRLPKLTTVQNVLDLTLTGKKIKADKAKKIGIVDRV 239


>Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical
           protein C29F3.1 protein.
          Length = 755

 Score = 34.3 bits (75), Expect = 0.090
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 348 PRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKV 473
           P    TQRLP+       +++ LTG    A++A K+G+V +V
Sbjct: 172 PGDGGTQRLPKLTTVQNVLDLTLTGKRIKANKAMKIGIVDRV 213


>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
            protein Y113G7C.1 protein.
          Length = 1494

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 441  HEHQRSFLSTRSPLLSTCQRIW 376
            H H   F++T+ PL +TC+  W
Sbjct: 1230 HGHPHRFIATQGPLDNTCEDFW 1251


>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chloride
            channel protein4, isoform b protein.
          Length = 1085

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 591  KSGLQLRSPLLWNFATEDRKEGMTAFVERDHEFQE 695
            +S L+ R P   NF  E RK   + F +R  EF E
Sbjct: 1023 RSSLRQRQPRSINFGIEPRKRSGSEFGQRPEEFVE 1057


>L11247-9|AAK84522.2|  639|Caenorhabditis elegans Hypothetical
           protein F09G8.8 protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 536 VNCEVGQTSCEPSLRDHPQIGLAVEKSTSMELCY 637
           +N  VGQ S +P+++ H Q+GL ++ S   E+ +
Sbjct: 312 INTLVGQMSLDPNIQKHVQVGL-IKYSDKAEVVF 344


>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chloride
            channel CLH-4b protein.
          Length = 1084

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 591  KSGLQLRSPLLWNFATEDRKEGMTAFVERDHEFQE 695
            +S L+ R P   NF  E RK   + F +R  EF E
Sbjct: 1022 RSSLRQRQPRSINFGIEPRKRSGSEFGQRPEEFVE 1056


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,452,905
Number of Sequences: 27780
Number of extensions: 354273
Number of successful extensions: 849
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)