Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1137
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar t...    74   9e-14
At5g43280.1 68418.m05290 enoyl-CoA hydratase/isomerase family pr...    56   2e-08
At1g60550.1 68414.m06816 naphthoate synthase, putative / dihydro...    54   1e-07
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP...    43   2e-04
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat...    39   0.003
At5g07870.1 68418.m00906 transferase family protein similar to a...    28   7.3  
At1g32415.1 68414.m04001 pentatricopeptide (PPR) repeat-containi...    27   9.7  

>At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar to
           AU-binding protein/Enoyl-CoA hydratase [Homo sapiens]
           GI:780241, [Mus musculus]GI:6840920; contains Pfam
           profile PF00378 enoyl-CoA hydratase/isomerase family
           protein
          Length = 229

 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
 Frame = +3

Query: 348 PRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVS-KVFPVENF*KNHQAAERIG 524
           P +  TQRL R VG+S + E++ TG   DA EA   GLV+  V   E   K  + A++I 
Sbjct: 110 PGAGGTQRLSRLVGRSVSKELIFTGRKIDAIEAANKGLVNICVTAGEAHEKAIEMAQQIN 169

Query: 525 THSPLIVKLAKQAVNQAYETTLKSGLQLRSPLLWNFA-TEDRKEGMTAFVER 677
              PL +K+AK+A+++  ET + SGL++          T+DR EG+ AF E+
Sbjct: 170 EKGPLAIKMAKKAIDEGIETNMASGLEVEEMCYQKLLNTQDRLEGLAAFAEK 221


>At5g43280.1 68418.m05290 enoyl-CoA hydratase/isomerase family
           protein similar to Delta 3,5-delta2,4-dienoyl-CoA
           isomerase, mitochondrial (ECH1) from Rattus norvegicus
           [SP|Q62651], from Homo sapiens [SP|Q13011]; contains
           Pfam profile PF00378 enoyl-CoA hydratase/isomerase
           family protein
          Length = 278

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
 Frame = +3

Query: 366 QRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVENF*KN--HQAAERIGTHSPL 539
           QRLP  VG + AME+ LT   F   EA+ +GLVSKVF  ++   N     AE IG  SPL
Sbjct: 164 QRLPSIVGYANAMELALTARRFSGSEAKDLGLVSKVFGSKSELDNGVTTIAEGIGGKSPL 223

Query: 540 IVKLAKQAVNQAYETTLKSGLQLRSPLLWNFA---TEDRKEGMTA 665
            V   K  + ++ E +++ GL   +   WN A   ++D  E ++A
Sbjct: 224 AVTGTKAVLLRSREVSVEQGLDYVA--TWNSAMLISDDLNEAVSA 266


>At1g60550.1 68414.m06816 naphthoate synthase, putative /
           dihydroxynaphthoic acid synthetase, putative / DHNA
           synthetase, putative contains similarity to MENB from
           Escherichia coli [SP|P27290], Bacillus subtilis
           [SP|P23966]; contains Pfam profile PF00378 enoyl-CoA
           hydratase/isomerase family protein
          Length = 337

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
 Frame = +3

Query: 372 LPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVENF*KNH-QAAERIGTHSPLIVK 548
           + R VG  KA E+     F+ A EAEKMGL++ V P+E+  K   +    I  +SP  ++
Sbjct: 223 MSRLVGPKKAREMWFMTRFYTASEAEKMGLINTVVPLEDLEKETVKWCREILRNSPTAIR 282

Query: 549 LAKQAVNQAYETTL-KSGLQLRSPLLWNFATEDRKEGMTAFVER 677
           + K A+N   +      GL   + LL+ + TE+  EG TA++ R
Sbjct: 283 VLKAALNAVDDGHAGLQGLGGDATLLF-YGTEEATEGRTAYMHR 325


>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
           identical to fatty acid multifunctional protein (AtMFP2)
           GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
           acid beta-oxidation); contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 725

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 348 PRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVENF*KNHQ--AAERI 521
           P    TQRLPR VG +KA+E++LT     A E   +GL+  V P        +  A + +
Sbjct: 146 PGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIV 205

Query: 522 GTHSPLIVKLAK 557
           G   P +  ++K
Sbjct: 206 GRRKPWVSSVSK 217


>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
           acid multifunctional protein (AIM1) identical to
           gi:4337025; contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 721

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 348 PRSRSTQRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFP 479
           P    TQRLPR VG +KA +++L      + E  K+GL+  + P
Sbjct: 143 PGFGGTQRLPRLVGLAKATDMILLSKSISSEEGHKLGLIDALVP 186



 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 307 KAKFGQPEINIGSIPGAGAPSVFP 378
           KA+ G PE+ +G IPG G     P
Sbjct: 129 KAQLGLPELTLGVIPGFGGTQRLP 152


>At5g07870.1 68418.m00906 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 464

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 513 ERIGTHSPLIVKLAKQAVNQAYETTLKSGLQLRSPLLWNFATEDRK 650
           ER+   S   V+  K   NQ   TT+ S  Q  + L+W   T  RK
Sbjct: 251 ERMFHFSSETVRSLKSKANQECGTTMISSFQALTALIWRSITRARK 296


>At1g32415.1 68414.m04001 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 761

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 617 WTSQLQARFEGGLVSLVHSLFGQLHN*RGV 528
           WTS +    E G VS    LF +LH+  GV
Sbjct: 403 WTSMIDGYLEAGDVSRAFGLFQKLHDKDGV 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,480,909
Number of Sequences: 28952
Number of extensions: 335976
Number of successful extensions: 827
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)