Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1136
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.62 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.82 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.3  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   4.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   5.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.8  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   7.6  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.6  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.6  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 52  WPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAAST 198
           +PPL    P      FP    +PS   +S AQ +  N + WV  + A T
Sbjct: 174 YPPLPQVPPLPLPPIFPPTMINPSAICESAAQLIFMNVQ-WVRSIPAFT 221


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 386 YGSVDRSSPPSLPSNKCGSRNKS--TTSLAPPLYTGSASKR 502
           Y S++ ++PP  P  +  S  ++  T S  PPLY    +KR
Sbjct: 723 YLSMENNAPPPPPPPRVESFAETVRTVSKIPPLYKDLVAKR 763


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +1

Query: 430 QMWISKQEYDESGPSIVHRKCF*THRGRCLQQPAAGCSIQA 552
           Q  +  QEY    PS +H        G   Q   A C +QA
Sbjct: 100 QQQMDGQEYRPDSPSSMHMANTAAPNGHQTQVVYASCKLQA 140


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 393 DPYGVLPLWRSNDLYLHCRWG 331
           DP G +PL +S + Y  C+ G
Sbjct: 159 DPNGNVPLGKSCNRYWQCQGG 179


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 351  YLHCRWGE 328
            YLHC WG+
Sbjct: 1294 YLHCLWGK 1301


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 416 SLPSNKCGSRNKSTTSLAPPLYTGSASK 499
           SL S    + NKS+TS  PP +  S SK
Sbjct: 56  SLLSPSGNTPNKSSTSPYPPNHPLSGSK 83


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 419 LPSNKCGSRNKSTTSLAPPLYTGSA 493
           LP+++C SR  S + + P   +G +
Sbjct: 79  LPNSRCNSRESSDSLVQPRCPSGES 103


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 163 PRSWVWKLAASTRQHITPS*SATWTSV 243
           PRS++  L+ S R H+    SA  T++
Sbjct: 196 PRSYIPPLSTSMRSHLCNWGSANSTNI 222


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 163 PRSWVWKLAASTRQHITPS*SATWTSV 243
           PRS++  L+ S R H+    SA  T++
Sbjct: 356 PRSYIPPLSTSMRSHLCNWGSANSTNI 382


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 163 PRSWVWKLAASTRQHITPS*SATWTSV 243
           PRS++  L+ S R H+    SA  T++
Sbjct: 356 PRSYIPPLSTSMRSHLCNWGSANSTNI 382


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,286
Number of Sequences: 336
Number of extensions: 4209
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)