Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1136
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 160 2e-40
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 89 8e-19
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 83 3e-17
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 77 2e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 74 2e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 48 1e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 48 2e-06
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 47 2e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 0.001
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 29 0.67
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.6
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 27 2.7
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 3.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.7
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 26 6.3
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.3
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 26 6.3
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 25 8.3
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 8.3
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 160 bits (388), Expect = 2e-40
Identities = 73/83 (87%), Positives = 78/83 (93%)
Frame = +1
Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 426
L N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTF
Sbjct: 293 LYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTF 352
Query: 427 QQMWISKQEYDESGPSIVHRKCF 495
QQMWISKQEYDESGP IV+RKCF
Sbjct: 353 QQMWISKQEYDESGPGIVYRKCF 375
Score = 153 bits (371), Expect = 2e-38
Identities = 72/81 (88%), Positives = 74/81 (91%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 182
DIKEKLCYVALDFEQE+ TAA SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+E
Sbjct: 211 DIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLE 270
Query: 183 ACGIHETTYNSIMKCDVDIRK 245
GIHE TYNSIMKCDVDIRK
Sbjct: 271 NAGIHEATYNSIMKCDVDIRK 291
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 88.6 bits (210), Expect = 8e-19
Identities = 38/81 (46%), Positives = 56/81 (69%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 182
++KEKLCYV+ D E + + ++ L ++Y LPDG+VI +G+ER+ CPE LFQP +G E
Sbjct: 211 EMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSE 270
Query: 183 ACGIHETTYNSIMKCDVDIRK 245
G+ E +++I DVDIRK
Sbjct: 271 QPGLSEFIFDTIQAADVDIRK 291
Score = 58.4 bits (135), Expect = 1e-09
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 12/86 (13%)
Frame = +1
Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 393
L R VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 394 GGSILAS-LSTFQQMWISKQEYDESG 468
GG++LA ++ MW+SK E++E G
Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 83.4 bits (197), Expect = 3e-17
Identities = 37/82 (45%), Positives = 49/82 (59%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 182
+IKEK CYVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G E
Sbjct: 216 EIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSE 275
Query: 183 ACGIHETTYNSIMKCDVDIRKT 248
A G+H + SI+ D+D+R T
Sbjct: 276 ASGLHIQLFKSILLSDIDLRST 297
Score = 75.8 bits (178), Expect = 6e-15
Identities = 35/83 (42%), Positives = 57/83 (68%)
Frame = +1
Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 426
L N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357
Query: 427 QQMWISKQEYDESGPSIVHRKCF 495
+++ I+ +EY ++ +++ R+ F
Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 77.4 bits (182), Expect = 2e-15
Identities = 37/88 (42%), Positives = 60/88 (68%), Gaps = 6/88 (6%)
Frame = +1
Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 417
L+ N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404
Query: 418 STFQQMWISKQEYDESGP---SIVHRKC 492
TF Q+WIS+QEY+E G +++ ++C
Sbjct: 405 GTFHQLWISRQEYEEHGSDRLALIEKRC 432
Score = 33.1 bits (72), Expect(2) = 5e-04
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 60 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 164
++ ++ E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
Score = 25.4 bits (53), Expect(2) = 5e-04
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 189 GIHETTYNSIMKCDVDIRKTCTQHRIV 269
GI + N I +CDVDIR + + IV
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIV 352
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 73.7 bits (173), Expect = 2e-14
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +1
Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLS 420
L+ N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402
Query: 421 TFQQMWISKQEYDESG 468
FQ +W+SKQEYDE G
Sbjct: 403 NFQHLWVSKQEYDEVG 418
Score = 52.0 bits (119), Expect = 8e-08
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Frame = +3
Query: 60 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYN 212
A +SS K +E PDG G ERFR E LF PSF + G+HE Y
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330
Query: 213 SIMKCDVDIRKTCTQHRIV 269
SI+ CD ++R + +V
Sbjct: 331 SILACDSELRSPLLNNIVV 349
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/79 (26%), Positives = 40/79 (50%)
Frame = +1
Query: 244 RLVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 423
+LV N +++GG PG+ R+++E+T++ P I + W G S +
Sbjct: 633 KLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEK 692
Query: 424 FQQMWISKQEYDESGPSIV 480
F+ ++++EY E GP +
Sbjct: 693 FKAAKVTREEYLEKGPEYI 711
Score = 29.1 bits (62), Expect = 0.67
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 129 ERFRCPEALFQPSFLGMEACGIHE 200
E+ R PE +F PS +G++ GI E
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILE 617
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +1
Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 426
L+ N V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHW 377
Query: 427 QQMWISKQEYDESGPSIVHRK 489
I++ EY E G +I+ RK
Sbjct: 378 NANKITRSEYSEHGANIMTRK 398
Score = 45.2 bits (102), Expect = 1e-05
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 20/92 (21%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------GQVITI 122
+IKE +CYV+ +F+++M S LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 123 GNERFRCPEALFQPSFLGMEACGIHETTYNSI 218
NERF PE LF PS + + GI E S+
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSV 308
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 47.2 bits (107), Expect = 2e-06
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Frame = +1
Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKYS 384
L +N VLSGG+T++ +R+Q+++ + + + +I+ ++ +
Sbjct: 326 LYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNA 385
Query: 385 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 486
VW GGS+LA F +K +Y+E G SI R
Sbjct: 386 VWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 34.7 bits (76), Expect = 0.014
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Frame = +3
Query: 6 IKEKLCYVALDFEQEMATAASSSS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFL 173
IKE+ CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299
Query: 174 GME-ACGIHETTYNSIMKCDVDIRK 245
+ + E N + +D+RK
Sbjct: 300 SSDFLTPLPELVDNVVQSSPIDVRK 324
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +1
Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 417
L + ++ GG +PG A +++ I + + I +I PP + ++ W G I +
Sbjct: 529 LYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRI 588
Query: 418 STFQQMWISKQEYDESGPSIVHRK 489
++WI ++ G ++ K
Sbjct: 589 RIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 29.1 bits (62), Expect = 0.67
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +3
Query: 210 NSIMKC--DVDIRKTCTQHRIV-RWYHHVPWNRRPYAKGNHSSRPIDNEDKDHCSSREEV 380
N+ +C D + C ++ RWY PW + KG+ + +E K+ SSR
Sbjct: 460 NTYFRCLHDKSVEYVCPFADVLGRWYE--PW----FVKGDLN---YTSEVKERTSSRLSA 510
Query: 381 LRMDRWIDPRLPLYLPTNVDLETRV 455
+ + W+D YL + +D+ + V
Sbjct: 511 VGSENWVDDDFYEYLLSEIDMVSAV 535
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +1
Query: 388 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 489
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 7 SRRSCATSLLTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNP 165
+R S A SS R P +P+AP+R PTV++S S A+ ++ P
Sbjct: 339 NRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 37 TSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRS 171
TS R PP + + SL N P RSS E D V + P++
Sbjct: 47 TSIARRPPSTVGSQTGSLVNAPPKRSSGIERFDHVTGTAENRPQT 91
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +1
Query: 55 PPLHPAA-PSRSLTNFPTVRSSPSET 129
PP HPA+ SR + ++ TV+SSPS T
Sbjct: 75 PPQHPASINSRRVASY-TVQSSPSRT 99
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 46 RRWPPL--HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWV 177
+ WP L HP P R P++ + P +T S + S +P S+V
Sbjct: 112 KHWPSLKPHPLPPKRVSLGIPSISNPPVDTVISDSP-TSPHPPSFV 156
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 313 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 423
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 64 HPAAPSRSLTNFPTVRSSPSETKDSV--AQRLSSNPR 168
HPA+ SLTN ++ + P+ D + S +PR
Sbjct: 131 HPASVENSLTNVNSIHAQPTTISDMIDLTDETSYDPR 167
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 128 VSDGDDLTVGKFVRLLEGAAGCSGGHLLLEVKSDVAQLLLDV 3
V+ GDD++VGK L G G L+ ++ A L LD+
Sbjct: 135 VAVGDDVSVGKKRGALVGRRGLGATVLVHKIAGSAAALGLDL 176
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 369 WRSNDLYLHCRWGESCD 319
+RS ++ L CRWG S D
Sbjct: 380 YRSPEVILGCRWGASAD 396
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -2
Query: 446 FEIHICWKVEREARIDPPIHTEYFLSGGAMIFI 348
F H C+K+ + I T YF+ G + F+
Sbjct: 364 FFYHPCFKLPSDPTYPSDIETNYFVKGETITFV 396
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,207
Number of Sequences: 5004
Number of extensions: 65624
Number of successful extensions: 264
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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