Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1136
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 6e-42
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 8e-42
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 8e-42
SB_56| Best HMM Match : Actin (HMM E-Value=0) 167 8e-42
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 167 1e-41
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 3e-41
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 145 3e-35
SB_54| Best HMM Match : Actin (HMM E-Value=0) 101 4e-22
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 2e-17
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 57 1e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 55 5e-08
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 55 7e-08
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 9e-04
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 36 0.044
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_53938| Best HMM Match : Gln-synt_N (HMM E-Value=0.78) 30 1.7
SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006) 29 2.9
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19) 29 3.8
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 5.0
SB_27551| Best HMM Match : rve (HMM E-Value=6.3e-25) 28 6.7
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 28 8.8
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 8.8
SB_58386| Best HMM Match : rve (HMM E-Value=8.6e-26) 28 8.8
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 28 8.8
SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 167 bits (407), Expect = 6e-42
Identities = 77/83 (92%), Positives = 81/83 (97%)
Frame = +1
Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 426
L NTV+SGGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 267 LYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 326
Query: 427 QQMWISKQEYDESGPSIVHRKCF 495
QQMWISKQEYDESGP+IVHRKCF
Sbjct: 327 QQMWISKQEYDESGPAIVHRKCF 349
Score = 163 bits (397), Expect = 1e-40
Identities = 76/81 (93%), Positives = 78/81 (96%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 182
DIKEKLCYVALDFEQEM TAASSSS+EKSYELPDGQVITIGNERFRCPEAL QPSFLGME
Sbjct: 185 DIKEKLCYVALDFEQEMQTAASSSSIEKSYELPDGQVITIGNERFRCPEALLQPSFLGME 244
Query: 183 ACGIHETTYNSIMKCDVDIRK 245
+ GIHETTYNSIMKCDVDIRK
Sbjct: 245 SSGIHETTYNSIMKCDVDIRK 265
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 167 bits (406), Expect = 8e-42
Identities = 78/83 (93%), Positives = 80/83 (96%)
Frame = +1
Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 426
L NTVLSGGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 256 LYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 315
Query: 427 QQMWISKQEYDESGPSIVHRKCF 495
QQMWISKQEYDESGP+IVHRKCF
Sbjct: 316 QQMWISKQEYDESGPAIVHRKCF 338
Score = 166 bits (404), Expect = 1e-41
Identities = 77/81 (95%), Positives = 79/81 (97%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 182
DIKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME
Sbjct: 174 DIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGME 233
Query: 183 ACGIHETTYNSIMKCDVDIRK 245
+ GIHETTYNSIMKCDVDIRK
Sbjct: 234 SAGIHETTYNSIMKCDVDIRK 254
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 167 bits (406), Expect = 8e-42
Identities = 78/83 (93%), Positives = 80/83 (96%)
Frame = +1
Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 426
L NTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 353
Query: 427 QQMWISKQEYDESGPSIVHRKCF 495
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 354 QQMWISKQEYDESGPSIVHRKCF 376
Score = 166 bits (404), Expect = 1e-41
Identities = 77/81 (95%), Positives = 79/81 (97%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 182
DIKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME
Sbjct: 212 DIKEKLCYVALDFEQEMETAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGME 271
Query: 183 ACGIHETTYNSIMKCDVDIRK 245
+ GIHETTYNSIMKCDVDIRK
Sbjct: 272 SAGIHETTYNSIMKCDVDIRK 292
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 167 bits (406), Expect = 8e-42
Identities = 78/83 (93%), Positives = 80/83 (96%)
Frame = +1
Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 426
L NTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 427 QQMWISKQEYDESGPSIVHRKCF 495
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
Score = 166 bits (404), Expect = 1e-41
Identities = 77/81 (95%), Positives = 79/81 (97%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 182
DIKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME
Sbjct: 211 DIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGME 270
Query: 183 ACGIHETTYNSIMKCDVDIRK 245
+ GIHETTYNSIMKCDVDIRK
Sbjct: 271 SAGIHETTYNSIMKCDVDIRK 291
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 167 bits (405), Expect = 1e-41
Identities = 77/81 (95%), Positives = 79/81 (97%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 182
DIKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME
Sbjct: 212 DIKEKLCYVALDFEQEMTTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGME 271
Query: 183 ACGIHETTYNSIMKCDVDIRK 245
+ GIHETTYNSIMKCDVDIRK
Sbjct: 272 SAGIHETTYNSIMKCDVDIRK 292
Score = 167 bits (405), Expect = 1e-41
Identities = 78/83 (93%), Positives = 80/83 (96%)
Frame = +1
Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 426
L NTVLSGG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 353
Query: 427 QQMWISKQEYDESGPSIVHRKCF 495
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 354 QQMWISKQEYDESGPSIVHRKCF 376
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 165 bits (401), Expect = 3e-41
Identities = 77/83 (92%), Positives = 80/83 (96%)
Frame = +1
Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 426
L NTVLSGG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 427 QQMWISKQEYDESGPSIVHRKCF 495
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
Score = 163 bits (397), Expect = 1e-40
Identities = 76/81 (93%), Positives = 79/81 (97%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 182
DIKEKL YVALDFEQEMATAA+SSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME
Sbjct: 211 DIKEKLAYVALDFEQEMATAAASSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGME 270
Query: 183 ACGIHETTYNSIMKCDVDIRK 245
+ GIHETTYNSIMKCDVDIRK
Sbjct: 271 SAGIHETTYNSIMKCDVDIRK 291
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 145 bits (352), Expect = 3e-35
Identities = 66/83 (79%), Positives = 74/83 (89%)
Frame = +1
Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 426
L N VLSGG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTF
Sbjct: 67 LYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTF 126
Query: 427 QQMWISKQEYDESGPSIVHRKCF 495
QQMWI+K+EY E GP IVHRKCF
Sbjct: 127 QQMWIAKEEYHEYGPPIVHRKCF 149
Score = 111 bits (267), Expect = 6e-25
Identities = 50/61 (81%), Positives = 55/61 (90%)
Frame = +3
Query: 63 ASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIR 242
A+S LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGMEA GIHE YN IMKCDVDIR
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIR 64
Query: 243 K 245
K
Sbjct: 65 K 65
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 101 bits (243), Expect = 4e-22
Identities = 45/80 (56%), Positives = 57/80 (71%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 182
D+KE LCY A+D+E+E+ A +S E Y LPDGQ I IG+ERFR E LFQPS LG +
Sbjct: 2256 DLKETLCYCAMDYERELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLGRD 2315
Query: 183 ACGIHETTYNSIMKCDVDIR 242
GIHE+ + SI KCD+D+R
Sbjct: 2316 IDGIHESIFKSIKKCDIDLR 2335
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 86.2 bits (204), Expect = 2e-17
Identities = 37/88 (42%), Positives = 54/88 (61%)
Frame = +3
Query: 6 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 185
+KEKLCYV + EQE A ++ L + Y LPDG+V+ + ERF PEALFQP + +E
Sbjct: 216 MKEKLCYVGYNIEQEQKLALETTVLVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEG 275
Query: 186 CGIHETTYNSIMKCDVDIRKTCTQHRIV 269
G+ E +N+I D+D R +H ++
Sbjct: 276 VGVAELLFNTIQAADIDTRSEFYKHIVL 303
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +1
Query: 244 RLVRNTVLSGGTTMYPGIADRMQKEITA-LAPSTMKIKIIAPPERKYSVWIGGSILAS-L 417
+L VL G T+ Q +TA KI+I PP RK+ V++GG++LA +
Sbjct: 323 QLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFMGGAVLADIM 382
Query: 418 STFQQMWISKQEYDESG 468
W++++EY+E G
Sbjct: 383 KDKDSFWMTRKEYEEKG 399
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 57.2 bits (132), Expect = 1e-08
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 16/103 (15%)
Frame = +1
Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITA----------------LAPSTMKIKIIAPPERK 378
L +N VLSGG+TM+ R+Q++I + P ++ ++I+ ++
Sbjct: 242 LYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQR 301
Query: 379 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THR 507
Y+VW GGS+LAS F + +K +YDE GPSI F HR
Sbjct: 302 YAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 114 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRK 245
+ + ERF PE F P F + + E N I C +D+R+
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRR 240
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/57 (45%), Positives = 36/57 (63%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 173
DIKEK+CY++ D +E+ ++ L K Y LPDGQ+I+IG E E LF+P L
Sbjct: 842 DIKEKICYLSKDHLKEVHNYKTNEGLTKFYTLPDGQMISIGYECISSMEPLFRPDLL 898
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 54.8 bits (126), Expect = 7e-08
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Frame = +1
Query: 187 AASTRQHITPS*SATWTSVR--LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKII 360
A Q +T S T +R L + +++GG T+ G +R+ +E+ + P +M++K+I
Sbjct: 149 AMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLI 208
Query: 361 A---PPERKYSVWIGGSILASL 417
+ E++++ WIGGSILASL
Sbjct: 209 SNNSSVEKRFNPWIGGSILASL 230
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 41.1 bits (92), Expect = 9e-04
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Frame = +1
Query: 235 TSVRLVRNTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYSV 387
T L N VL GGT M PG R+ +EI L S +K+ PP +
Sbjct: 73 TRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITA 132
Query: 388 WIGGSILASLSTFQQMWISKQEYDE 462
W+GG+I SL +++ Y +
Sbjct: 133 WLGGAIFGSLEVLADRSTTRERYQQ 157
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 35.5 bits (78), Expect = 0.044
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEM 53
DIKEKLCYVALDF QE+
Sbjct: 90 DIKEKLCYVALDFYQEI 106
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 31.9 bits (69), Expect = 0.54
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 144 PEALFQPSFLGMEACGIHET 203
PE +FQPS LG+E GI ET
Sbjct: 3 PEIIFQPSMLGLEQAGITET 22
>SB_53938| Best HMM Match : Gln-synt_N (HMM E-Value=0.78)
Length = 140
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 393 RWIDPR-LPLYLPTNVDLETRVRRVWPLHCTQEVLLNAPRSLPPAARG 533
RWIDPR + P NVD R +H + LL + S+P +RG
Sbjct: 29 RWIDPRGNQIPAPPNVDSSGRSLSADGIHKSDLRLLGSSLSIPSTSRG 76
>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
Length = 1382
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 16 SCATSLLTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSV 141
SCA S+ + L PA+P+ S++ F T++ T+ S+
Sbjct: 970 SCAEPRSIDSKHYTALSPASPASSISCFSTLQLKQMPTRSSI 1011
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 232 WTSVRLVRNTVLSGGTTMYPGIADRMQKEITALAP 336
WT R N ++GG TMY R+++E+ A+ P
Sbjct: 126 WTFGRC--NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19)
Length = 158
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 112 SSPSETKDSVAQRLSSNPRSWVWK 183
S+ SETK SV +R + + W+W+
Sbjct: 96 STKSETKASVVERFNRTSKEWMWR 119
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 9 KEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPE 149
+EK+ L+ E E A ++ LEK +L + +G+ER RC +
Sbjct: 2983 REKIVTSDLESELETERALQANELEKQNKLLEKLSADLGHERSRCED 3029
>SB_27551| Best HMM Match : rve (HMM E-Value=6.3e-25)
Length = 291
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 112 SSPSETKDSVAQRLSSNPRSWVWK--LAASTRQHITP 216
S+ SE K SV +R + ++W+W+ TR+++ P
Sbjct: 226 STQSELKASVVERFNRTLKTWMWRWFTHKETRRYVLP 262
>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 22 ATSLLTSSRRWPPLH-PAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSW 174
AT+L T + W P H P +++L P S PS A L + P+ W
Sbjct: 242 ATTLGTKPQPWGPSHNPGDQAKTLGTKPQP-SGPSHNPRDQATTLGTKPKPW 292
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 49 RWPPLHPAAPSRSLTNFPTVRSSP 120
R+P +H P+ + + FPT+RS P
Sbjct: 883 RYPAVHSQEPASTTSPFPTLRSMP 906
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 112 SSPSETKDSVAQRLSSNPRSWVWK 183
S+ SETK SV +R + + W+W+
Sbjct: 457 STKSETKASVVERFNRTFKGWMWR 480
>SB_58386| Best HMM Match : rve (HMM E-Value=8.6e-26)
Length = 212
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 112 SSPSETKDSVAQRLSSNPRSWVWK 183
S+ SETK SV +R + + W+W+
Sbjct: 93 STKSETKASVVERFNRTFKGWMWR 116
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 28 SLLTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNP 165
S L S R P PA PSR L+NF + + T+ + + ++NP
Sbjct: 1054 SPLKSRRAMDPKDPATPSRKLSNFIPIITRDKPTR-PLPVKSNNNP 1098
>SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 112 SSPSETKDSVAQRLSSNPRSWVWK 183
S+ SETK SV +R + + W+W+
Sbjct: 439 STKSETKASVVERFNRTFKGWMWR 462
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,162,186
Number of Sequences: 59808
Number of extensions: 568867
Number of successful extensions: 2035
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2019
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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