Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1136
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             142   3e-36
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.7  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  142 bits (344), Expect = 3e-36
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 48  EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 227
           EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 228 DVDIRK 245
           DVDIRK
Sbjct: 61  DVDIRK 66



 Score =  132 bits (320), Expect = 2e-33
 Identities = 63/66 (95%), Positives = 64/66 (96%)
 Frame = +1

Query: 247 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 426
           L  NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTF
Sbjct: 68  LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTF 127

Query: 427 QQMWIS 444
           QQMWIS
Sbjct: 128 QQMWIS 133


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 285  HGGTTGQYGVAYKSYG 238
            +G   GQYG  Y  YG
Sbjct: 1820 YGSQYGQYGAPYDHYG 1835


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 261 RIVRWYHHVPWNRRPYAK 314
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 261 RIVRWYHHVPWNRRPYAK 314
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,672
Number of Sequences: 438
Number of extensions: 5096
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)