Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1133X
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit S14|...    50   1e-07
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    28   0.85 
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    26   2.6  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   3.4  
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    25   6.0  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   6.0  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    25   6.0  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   7.9  

>SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 23/59 (38%), Positives = 36/59 (61%)
 Frame = +1

Query: 250 DSDKQINQFEWNATPMRINNRCVITSRPRGIVKEWRMSRIVWRHLADYNKLSGVQRAMW 426
           ++ K+I     NA P +I NRC+ T R RG+ + + ++R  +R  A  NKL GV++A W
Sbjct: 47  EAKKRIEALPTNAHPTKIKNRCIETGRGRGVFRAFGLARFPFRLKALANKLPGVRKASW 105


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 27.9 bits (59), Expect = 0.85
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 208 INSGPSKKVLCTQSTPLYITNHEPVSPFIPYLLIPDSG 95
           ++ GPSK +L    T  + TN + + P  P     +SG
Sbjct: 485 VSQGPSKNILTLDWTSFWATNKKIIDPVAPRHTAVESG 522


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 176 AENFLGRTRVNALRKNDILPVEIREIVTSKSISLN 280
           A+NFL        R + I P EI+ ++ SKSI+L+
Sbjct: 267 AKNFLVSDATVTKRLHIINPTEIKNLLDSKSINLS 301


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 282 ECHTYEN*QQMCYHFTTQRYSKGMAHESYSLEASSGLQQTL 404
           E  T+ + +Q+C +FT ++  +   H  + LE     Q+ +
Sbjct: 463 EIFTFNSFEQLCINFTNEKLQQFFNHYMFVLEQEEYTQERI 503


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 304 NNRCVITSRPRGIVKEWRMSRIVWRHLADYN 396
           NN  VI     G  + W +  + W+H+   N
Sbjct: 45  NNEIVIVMSDIGTERRWNLQSLPWQHVTVEN 75


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 316 VITS-RPRGIVKEWRMSRIVWRHLADYNKLSGVQRAM 423
           V+TS    G +KE+R SR++ R    + KL  VQ+ +
Sbjct: 196 VLTSINENGTIKEFRTSRVLLRCPNVFKKLKEVQQPL 232


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 306 VNSHRCGIPFKLIDLLVTISLISTGR--MSFFRNAL 205
           V++  C I   L+D+  T  L +TG+  +S  RN+L
Sbjct: 479 VDASACSISISLMDIAKTYGLTNTGKSSLSVGRNSL 514


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 31  KYYNELKYLNFRKIHSKITINSRSRVSTS 117
           K ++++KY N+R +H+       S +S+S
Sbjct: 289 KVFHDIKYANYRLLHNLRAFPGISAISSS 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,310
Number of Sequences: 5004
Number of extensions: 36012
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)